result

Gene information

Detail information of AfisC5G00127

Location

Gene	Chr	Start	End	Strand
AfisC5G00127	chr5	21701179	21706003	-

Sequences

CDS

Protein

Gene

>AfisC5G00127
ATGTCGATATGGAGCAACTCAATAATCAATCGCGAGCTCTCAAAACGCACGTCTGTCTTCAACCTCCGCCTCTACGTCGTCATCGGCGTCGTCGCCGGCGTCGTCTTCGTCCTCTTCCTCTTCCTCCTCTCTCTGTGCTGCTGCTCCTCCTCTTCCTCCAAGAAAAATTCCAAGAAATCCAGACTCGAACCAAACTCAGCAAAAAATACCGATCAAAATAAGGTCTTGCAGCAGCAGCAAACAGTTCAAGCAACGCCATTGAAGCCGAAAGATTTGATTTTGGACATAGAGTCAGGGGAAGGAGCTGAGAAAGTGGAGGAGAAAGTTGCTCCGCCACCGCAGGTGCAGCCAAAAGTGTCGCACTTAGGATGGGGGTGCTGGTACACGTTAAGAGAGATTGAAGAGGCCACGAATGGGTTGAGTGAAGGGAATGTGATTGGTGAAGGTGGTTATGGCATTGTTTATAAAGGTGTTTTGGTTGATGGAACTGAAATTGCTGTCAAGAATCTGCTAAACAATAAGTTAGTTTTTAATATATCCTTTTGTTTATCATTACTATTTAATGATTGTTTACTGTTTGTTGAAAGATGCAAACCTTGATTTGATACTCAATTTTGAAGAAGACCAAGCAAGAGAAAAATCAAGTATTTTCATACAGTTTTACATTTCATGGCTGGTGAAGCAATACTGTACTCAACCTGAAAATTTAATTCATTAAAATGTTCTTGCTTTAAAAAAACAAAAAAAAAACAAAAATCATATTATGTAGGTAAACAATAATATAGCAGAAAGATTTTTGTGTTTTGACATTGGAAGGATCATTTACCTTACAGTGTGGATCTTAGTTCAAGCCACATTTCAAATATAGTGATTTTTAAAAATATTCTTTTTGATAATTAAGTTGACTTGATCAGTACATATAAGTGGCTGAATCATTTTGTTCTTACATTTTCGGATTGTTAGTTACAAAATGGATCTTGCAATTCCCTGAATAGCAAGTAACATTACGATTCGATATTTAATTATCAACATTGGTTACCCGTGCATTTAGCATGCTAAGGTAAAAATTTACTTTAGGCCATTTTATTTTTTGGTTTAACAAGACATAAAGCTTTAATCGTATCTAACTAGAGATGGATGCAATATAGACTTTTTTTTTATGGAGATTCAATTAGAGACTAACATCTGACTGCATGTTAAAAAATTGCGGTAAGGCTACACCTATATTCTATATTCTAACTCTAATGGATGTTAAATTGCAACTTTATACTTGCTTTTAATCAAATCATTGCTACCAAAGAATACGCATAAACTGCAAGCATAAAAATTAAATCATATAGTATCCAAAATTTCTTTCTTTGTTGAAGAAATAATAGAACGATTCAGTCCAACACCACTGTTCCAGTGGTTAGGCGCGCTGGCTCTGGTCCATGATGTTCGAGTCCAATATAGCGTGAGTCAAACCATTGAACATATATTGACCTGTAGTATGTTATATACTACCTAAGATTTGTAGTTACAACCATGTACTACCACATGAGAAAATTATCTAATATTTTATGATATTTCAGAAAAAAATAAAACGATTCCAATCTAGAAAAAATAAAATTGATATTTTATGCATATCTCCAAATATTAGAACTGTTCAAATTTGAAACTTTTAATAGAAGACATTTTATCATCTAATATTTTGGTCTTTTTGTTACTGAAATCATATTACACTGACAATATTTCTTTTTTATTTCATACCAGAGTTTGGCATAATGCATATTTTGTTTTTATATATTTATATAATTAGTGTGACATTGAGAGTTTTTTTTTATTACTTTCTGATTTATATGAGGTAAGGCTTTTCAATTTTATTTTTAGTACTGTTGCACCTGCACCCCCTCTGGACTAAAGAAAAATGAATTTGCCTCTATACTACTAAAATTTACACGAGAGCACAAAAATGTTAGAATTGACTTGCTTCGATACTAATATAATGAATTTTACATTTTCCATATTTTTTCCCCCTTAAGATGACAAAAACTCTTTGGCAAACCAAAAACATTAGTATTTTTCATTCATCTAAGATACTAAAATGTACTAAAAAAATGTTATATTACATTTTATAATCAAGTACTAGAATTTTATTAGGGGTCAAGCAGAGAGGGAGTTTAAAGTAGAAGTAGAAGCAATTGGAAGAGTCAGACATAAACATCTAGTCAGGCTACTTGGATACTGTGCCGAGGGTGAATACAGGTTTATTGCTTAAACTTAAGTTCATAAATTCACACAATATAATTTCAAAAATGTATTGAATCTTTGTTTATATGTATGTTCTTGTTAGAATGCTTGTTTATGAATATGTCGACAATGGCAACCTTGATCAGTGGCTCCATGGAGAAGTAGGCGATGTTAGTCCACTCACATGGGAAATTCGAATGAACGTTATACTTGGAACTGCAAAAGGGTATATTTGAGTATTTATATTATAATTATATTTCCATTCAATGCGTTGTTAATAAAACTTGTGATTTGCAGCTTAGCTTATCTTCATGAAGGCCTTGAACCAAAAGTTGTGCATCGAGATGTAAAAGCAAGCAATATACTTCTAAATCAGCAGTGGAATCCTAAAATTTCTGATTTTGGCCTTGCCAAACACTTGGGTTCTGAGAAGACTTATGTTACCACTCGTGTTATGGGAACATTTGGGTCAGTTTAACAATTTTAGAACAAGCCTCTATCTGTATCTTTTAATACAAAGCTATATAGAATCAACTCCATTTTATTTTGAAAAAAAAAGAGCTGATAGCAAAGAAATGATGAACCGTTTGAGTTCCACTTCGATACAAATTTATATTAGAACATTGATAAGTAGACATATTATCCTTTGTCTTCAAACTTAATACCCAGAAAACCCTTTTCAAAAACAGGTTTCATGAAACACCCCAGTAATTATTTTTAATGAAAATATTCAGTCCACACTGCAAATATTTATTTTATAAAAAACTGCAGTGTAGACTGCATTTTCGTTGAAAATAATTACATTGGATTTTCGTGAAATGTTTTTAGGAAGGGGACTGAAGTGAATTTTGAAACTTATGAAGGGTGTTTGAGAAACGTCCTTTTTTTATGATTTTATCACTTTGTAAAATATGTATAAATATGCGTGGAGTAACTTATTTGGTAATCATGCAGTTATGTAGCACCTGAGTACGCTAGTACTGGAATGTTGAATGAGAGAAGTGATGTGTATAGCTTTGGTGTACTAATCATGGAAATAATCTCAGGAAGAACTCCTGTGGATTATAGAAGACCACGAGATGAGGTTCCTATCTTCTTATTTGTATTATAATTTATAATACATACATAAATGTTTTTATATTACCTCCTTTCAAATTAATTTAGGTGCACTTGGTAGAGTGGCTAAAACTCACGGTTGGGAATAGAAGATCTGAAGAAGTATTGGATCCTAAAATCTTAAAAAGGCCATCTCCAAAGGCACTAAAAAGAGCCCTATTAATAGCACTTAGATGCGTGGATCCCGATTCTCATAAGAGGCCGAAAATGGGAAACGTGGTACACATGCTCGAGATGGACAACATTTTGTTTGGTGAAGTAAGTCGTTTTTCTTATTCACTGTACACAAATAGAAAGTTTAAGGTTCATCCTTGGCAATGAACAGCAGAAGCGATTTTTCCAAGCTTGCTTCAAACATAATTTTTCCATTTTATAGTCTCGCACTGGGACACTAAATGTAGTGTGACCTGCATAAGATGTATCACTTTCTATAGTGTCATTTATATTTTTACTTTAGTGCTCATATGGACATGAGCGTTCAAGTTTATGCCTATTAAATATCCAAAAATTCGAGTTTTGCCTGAACGCCTTGGTCAAATGCACGTGAAATGCTTAAATGTTCACATGTTTAGTTCAAAATATTACCAAAAGTGAAGATACGTTGAGAACAGTCTCAAACAGCCTAGATAAATATTTACCATGGAAGATCTTATACTGTTAAATATTCGCCAATAATAGGATATTTGGATGGTAGCAATACCATGATTTTGATTTAGTATTAGTTGAAATAGACATATGGTAGGTAGTATGGCTAGATAGAAGATATATTTTTTCTACTACATACTCCTAAATTGGTTGCAAAATCATCAATACCAGTTATTTGTTTATTCATATATTCTATTTTCTATCATTTATGTTAAGCTTGACATTTCATGGTGGGCTTTCTTTTTCTTCTCAATTATGCTACTAACCTGTGTATTTTCTTTTTCTTCGTTTTAAAATGACTCTTTTTGATGGATAATTTGTAATGCCATCTTTCCTTGTACTCAGTTTAAAAACGATTAATGAATACAGTAGTTCTTATTATTATTTAGAAATAAACTAATTGTTATTTTATTCAGTTGAAGTTTTTGACCTCCTTTTCTAACACACAGGGAAAAAGATTAGAGGAGCATGCATCTGTCTCTCACCCTAGCAGTCATTCAAATGACAAAAGGCCAGTGACCAGATATAACTGAACCTGTGATGTTAACTTTCATCAAGGGGTATAGTTGATATCTTAAGCATTTCCTACTATTCATTTTATTTATTTGTTTCAACAAGAGAGCCCTCCTCATTTTTTTCTTTTTTTGTATATTATATTACTAATTTGTTGTATGATGTTTGTGATATATAAGTGGTTCCAAGATGGTCAGGAAACTAGGGTTATTCATGGGAAATATTGTATTTTTCTTTACAGTGTTCAGCTCTAAAGTTGTAACAATTTACTTCCTTGAGCTTTGTTATATTTTTGTCTGCTCACTGTTTAGCTTTGAAGATG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020246311.1	3.6e-166	probable serine/threonine-protein kinase At1g01540
Swissprot	Q3EDL4.2	5.9e-150	Probable serine/threonine-protein kinase At1g01540
trEMBL	A0A5P1FQD5	2.6e-166	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G01540.2	62.50	1e-161	566		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G00127	AT1G01540.2	448	145	6	1	429	1	444	62.50	1e-161	566
AfisC5G00127	AT4G01330.1	453	146	6	1	429	3	452	61.81	1e-158	556
AfisC5G00127	AT4G01330.2	454	146	6	1	429	3	453	61.67	2e-158	555

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	142	409	161.5	2.2e-47

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0016021	C	integral component of membrane
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0007166	P	cell surface receptor signaling pathway
GO:0019722	P	calcium-mediated signaling
GO:0009506	C	plasmodesma
GO:0009507	C	chloroplast
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009845	P	seed germination
GO:0010068	P	protoderm histogenesis
GO:0019901	F	protein kinase binding
GO:0042335	P	cuticle development
GO:0046777	P	protein autophosphorylation
GO:0048364	P	root development
GO:0048367	P	shoot system development
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network