result

Gene information

Detail information of AfisC5G00593

Location

Gene	Chr	Start	End	Strand
AfisC5G00593	chr5	114251686	114253110	+

Sequences

CDS

Protein

Gene

>AfisC5G00593
ATGGCGTTTGCAGGAACCCAACAAAAATGCTCAGTGTGCTCCAAAACGGTATATTTGGTGGAGAAGTTGACTGCTGATAACCGTATCTTTCACAAAAGCTGCTTCAGATGTCACCACTGCAAAGGAACTCTCAAGGTCTTCTTATTCTTCTTCTTCTTCCCTTTTCAATATCTCACAGATATCTTGTATTTTTCTCATTGACTTTCTGTTTTCTTTTGATCAAATTTCGGTTGCTAGATGTGTAAAGTACAAAGGATTTTTCAAATCTAAAAGCAATGATCTCTGTTACTTTACCTAGAACTGAATAGTAGACAAAAGCTAGAACTGAACAGTGGACAAAATTAATCCATTAATGGTGTAAAAAGTGAACAATTTTTTAAGTGATCTGAGTTTTAATTTGCTTAGCAAATCTTGTTTAAAACCTCATTTGGTTCAGAAAATATATAATAAACATTTTACATTGTGATGGTAAGTAGTTCTTTAGTATATCTTAAACAATATTTGAATCTGCACAGACTAACTTAAATTTGCATTTGAATGATTTACTTATTCATAACAGAGCTACTACATAAGCATAAAGATGAGATTCATTTGGCAGTAACATATAGAAGTTACCATTAGCCATGCTTCTTTCATTTATCTTTAGATTCAACATCTTTTTCTTCTTAAACTCCAAGTTACAAATGATCTAACAACTTGTAATACATAACAGCTTGGCAATTACAATTCTTTTGAAGGAGTTCTATACTGCAGACCACATTATGATCAGTTATTCAAAAGGACTGGCAGTCTAGATAAGAGTTTTGAAGGTGGTTATCCATACATACATACATATACACACACATATGTATATGTATATTTATATGTAATTTCCCACTCAGCTTCTTTTTATGCAAGAACTTACAGATTCGTTTTACATTATTCAGGTACTCCAAAAATTGCCAAGCCGGAAAAACATATAGTAAATGAGGTAATATACCATGTATCGATGTTATTTTCATATATGATTAGTTCATGTTATGGCATATAAATAACGGATTCTATGTAAATTATCTTTAGGGTGCGGCAAGCAAAGTATCAGGAACATTTGCAGGAACTAAAGAAAAGTGTTTTGGATGCAGCAAGACAGTGTATCCTACTGAAAGGGTGCTTTTATTTTACAGATATAATATACATATTCAAATAACTTACCAAGATAACGTAGCTAATTCATGGCGATTTATATAGGTGACGGTAAATGGAACTGCATATCACAAATCATGCTTCAAATGCTGCCATGGAGGATGTACCATTAGTCCATCAAACTACATTGCACATGAAGGGAAGCTTTACTGCAAACATCATCACACTCAACTTGTTAAAGCCAAAGGAAATTATAGCCAGCTCGAAAATGATTCTGAGAAACTAAATAATGAAGCAGCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010938994.1	4.7e-88	LIM domain-containing protein WLIM1
Swissprot	Q94JX5.1	4.4e-83	Widely-expressed LIM protein 1
trEMBL	A0A835Q512	1.2e-88	LIM domain-containing protein WLIM1-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G10200.1	77.22	3e-80	293	AtWLIM1;WLIM1	GATA type zinc finger transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G00593	AT1G10200.1	180	40	1	1	179	1	180	77.22	3e-80	293
AfisC5G00593	AT1G10200.1	82	46	0	3	84	103	184	43.90	1e-13	72.8
AfisC5G00593	AT1G10200.1	80	47	0	102	181	3	82	41.25	1e-11	66.2

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00412.19	LIM	Domain	10	64	41.8	8.2e-11
PF00412.19	LIM	Domain	109	163	44.2	1.5e-11

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0001725	C	stress fiber
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003729	F	mRNA binding
GO:0051015	F	actin filament binding
GO:0051017	P	actin filament bundle assembly
GO:0003785	F	actin monomer binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0005925	C	focal adhesion
GO:0016491	F	oxidoreductase activity
GO:0008270	F	zinc ion binding
GO:0030835	P	negative regulation of actin filament depolymerization
GO:0031323	P	regulation of cellular metabolic process
GO:0031529	P	ruffle organization
GO:0032154	C	cleavage furrow
GO:0044260	P	cellular macromolecule metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0080090	P	regulation of primary metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09377	CSRP; cysteine and glycine-rich protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network