result

Gene information

Detail information of AfisC5G01678

Location

Gene	Chr	Start	End	Strand
AfisC5G01678	chr5	319011249	319012310	+

Sequences

CDS

Protein

Gene

>AfisC5G01678
CCCATAGATCAAAAAATATCTGATCACATTCCAACATATTACGAAACTGCCATCCTCCATTTTGCATTAAACTCCTCTTTCTAGCATTCTATATCACCCCCCCTCCCCACTAACCTCACATCACCTTCGCCTAACCCTGATTAAAAAAAATTAACAAAGGACATGACAACAACTGAAAAGCTGCATCGCCTCGGTAGTGGCGAAAGCAGCGTCGAAACCGAATACTCCACCAACAGTAAAAAACTCCCATCCTCCCAATACAAAGGCGTCGTCCCTCAGCCCAACGGACGCTGGGGCGCCCAAATCTACCAAAAGCACCAACGCGTCTGGCTCGGCACCTTCAACCTCGAAGCCGACGCGGCCCGAGCGTACGACGTCGCTGCCCAGCGCTTCCGGGGCCGCGACGCTGTCACCAACTTCAAGCCCTTGTCCGACTCCTCCGACGCCGACATCCCGGAGCTCGAATTCCTCGACCTCCACTCCAAGTCCGAGATCGTCGACATGCTTCGCAAGCACACCTACTGCGACGAGCTGCTGCAGAAGAAGAAGAAAGCTTTAAAAAATAAAAACAGCAGCGTTAAACATCTTAACAACAACTTCATCGGTTTGGTTCAGCGAGAGCTTCTGTTTGAGAAAACTGTAACGCCTAGCGACGTTGGGAAGCTGAACAGGCTGGTGATACCCAAGCAGCACGCCGAGAAACATTTTCAGTATGATCACGACGGGGGCAGTAATGGAATTTTGATGAATTTCGAGGATGGAAGTGGAAAAGTTTGGAGGTTCAGGTACTCGTACTGGAACAGCAGCCAGAGTTACGTGCTGACCAAAGGGTGGAGCAGGTTTGTGAAGGAGAAGAGTTTGCAAGCAGGAGATGTAGTGTCTTTTGAGAAGATTTTCAGTGGAGAAGAAGATCTAAACGAGAAGCGTTTGTTTATTGATTGCAAGCAAAGAATCAAGCAGCAGCTTAATGTTGATTGGTTATTTGGTGTTAATATTAATTCTAGTGTCGATGATCGTTGGATCAATCCCAATGGAAAAAGGAGTGGTACAGTTGATTTGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008799316.1	6.2e-90	AP2/ERF and B3 domain-containing transcription repressor RAV2-like
Swissprot	Q9C6M5.1	2.6e-85	RAV1-like ethylene-responsive transcription factor TEM1
trEMBL	A0A8B7CHB7	4.5e-90	AP2/ERF and B3 domain-containing transcription repressor RAV2-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G25560.1	60.27	2e-89	325	AtTEM1;EDF1;TEM1	AP2/B3 transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G01678	AT1G25560.1	292	93	6	2	278	37	320	60.27	2e-89	325
AfisC5G01678	AT1G68840.2	317	94	9	6	298	34	335	58.04	4e-88	321
AfisC5G01678	AT1G68840.1	317	94	9	6	298	34	335	58.04	4e-88	321

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	32	79	33.2	4.1e-08
PF02362.18	B3	Family	156	246	99.6	6.8e-29

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009536	C	plastid
GO:0009741	P	response to brassinosteroid
GO:0009910	P	negative regulation of flower development
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0048366	P	leaf development
GO:0048527	P	lateral root development
GO:0048573	P	photoperiodism, flowering
GO:0080113	P	regulation of seed growth

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09287	RAV; RAV-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network