result

Gene information

Detail information of AfisC5G02558

Location

Gene	Chr	Start	End	Strand
AfisC5G02558	chr5	485329005	485334468	-

Sequences

CDS

>AfisC5G02558
ATGGGTCACACTAAAGCGGAAACTGATTTTGATATGATTTTGGCGGATAACCAAGAAGAAAATGACGAAGGTAGCTCAGGTGGGTCGATCATAGATGGAAGAGGATCAAAGTTAAAGAAAGGACCCTGGACATCTGCAGAAGATGCCATTTTAGTCGATTATGTAAACAAAAACGGTGATGGAAACTGGAATGCTGTACAAAAGCATTCAGGACTTTCTAGATGTGGCAAAAGCTGTCGATTGCGATGGGCTAATCATCTTCGACCAAACCTTAAGAAGGGTCCATTTACCTTAGAAGAAGAAAAGAAAATTATTGAACTTCATGCCAAGATGGGTAATAAATGGGCTCGAATGGCTGCATTTTTACCTGGGCGCACAGACAATGAGATCAAGAACTACTGGAATACTCGCACCAAAAGGCTCCAGCGTACTGGATTACCACTTTACCCTATTAATATTTCAGCATCCGACGAAATTCAGCAGGGATATAAATTTGGGGATTATAAAGATGTTATGCAAACTGACTTTTGTGCATCACCAGAATTAACATCATCTTTTTACAGTTTACCTTGTGCACCAGAAACATCATCAAATAGCATGCTACTTCAAGGTTTTGGATCTCAAAGCCACAGCGAATTTCTAGGTCAATCAATAGACCAATGGTACCGATCAATCCCTTCCACTACGGATGATGATATTCCTATGCTTAGTAGTTTCTTCAATGGGTCTAGTGCGAAAACTGAAATGCCCTTGGAGTCAAACAATCATTATCATGATGGCAGCCATGCTGTACTAACAAATGGCAACAATATCTCTAGCTCCGGGCATAATATGGTGCCTGTGAAGCCAGAGCTCCCTTCACTCCAATATGAATGTAACAATGAAACTGAGATAAGCTGGCAAATAATCGATGATACTGTTAATGATTATATCCAGTCTCCTTTAGCTGTTTCAAGTCTTTCGACACTCTCTGAATTTTCTTTATCTGAGAACAGCGGTCTGCTTGATGATGTAGTTCTAAAGTCCCAGAAAATTCTTAGTGGGGATAACTCTCCTTATAGTATGGGCTTCAAATCTTCTTTAATGATTCCTAGTGATCTGATGGATAGTTCTGGATATAATGGTGTATGTGATGAAGAATGCTGCTCAATTTCTCCCTTCAGCACCCCAGATGCAACTGTATTCAGTGACTTCACCCCTCTACTTATTGGAAGTTCGGGTTCAGCCACAATGGAGAAAGACGGGAAACAAAGTCCAGCAGAGAATATACGCCCAGATGCATTGCTAGAGTCTGCATGTTTCTTTAATTGCTCTCCAGATGAGACTGAGATGAACAATGCATTAGCACTTTTAGGTACCTATGAAGATGAACAAAAAGCCTCACTGAACGAAACAACCTCGCCATTCAATGGTGGAATGATGCTTGATTCTTCTTATTCATGGAGTAATATGCCTAGAATGATGCTTGATTATTCTCATTAA

Protein

Gene

>AfisC5G02558
CAAAATATAAAAGTCGAATAAAAGAAAGAAGGGAATGAAAGAGGAGAGAGAGGATGTTGATCGTGTCTGCCTGTAGCTTGGGCCGGAAATTTTCTCTCTCCTAAAAACAATAAAAAAACCATTAGAAAAATCAATTCATCTCTTGCTAAAACTTCGGTAATAAAATCTTTCTCGATTTTAAGCTCTGTTTCCTAATTTGGATCTCAATTATTCAGCTCAGGCTTTGTGCTCTTTTGGTTAAAATTTTTTGCTACAACCGAAGAAGGATCTTTACTTTTGTCTTCTTTTACAAACGATTGATGATTAATTATAATCATGAGAAGTTAGTAACAAGTAGAAATGTAACCGGATCTTATCAAATTATATCTTCTGCAACGCAGGCAAGTTTTTCGAATTTTGAATCCCTGTAAAGATAATCAGACGATTGTCTTGGACTAATTTTAGACTCGAGATGTATTACGGGTTATCTGCTACTTCTTCAGTGTATTTAATTGCGGTAATTTGGTTTTTAGCGGTGTTTTTATTAAATAATTGGGATTAATTTTGTCGTTTTCAACTTTTGCGTTCATATTTGTATATATTAGTAGTTGGTCCAAGTTTACAAGTGAGAAAGTGTTTTGATGGAGAATGATAGTTGAGGTGGAACTTGTGCTATTTTTTATTGCAATCTGCATTGAGGTATTATTTATTGTTAAAGGAAATCCATACGATGAAAGTAGTCGATTGTTTAGCTTTTGTTTCCTTTTCTTTTATCAATTTTTTGTATCTTTGTGTAGGAACCAGTATAAAATGAAATTGGGGAATGTTTTAATAACTGCTATTGATTAGTCAAATTGGCTAAGTTACTTTTAGCTTAGTTGGTTGAACTTTCAGATGTGTGGATTTCGGTTAATTTCTTTAAGTGGTTAAGTTCAACTATTGGATGATCGATATGTATTATGTTCCCTTTTTACGATGATTAGCTCTCAAATTTTCTTTTGCAAAATTGATTAAGTTTGATACCTTGATGTGATCAAAACAAAACAAAAAAATTAGTGCAAATTTCATTACAACTAAATAGTATTTTCGATTACGTTCAGTTACTTTGTTGGATTCTTGGGTTCTCCTAAAGCAATTTTGGCTGCATGAACTTCCTTATTCACTCACCTATTTTTGATATATTAAATTTCATTTACAATTATTGTCATCCTCACTTCATTCCATGTTCAGGCTGTCGTCTTCTCATTTAAATATGTGTATATTAGCACACCAACGTGTGTTTGAATGACAGCTGAAACTAAAGATTTGATTTGGAAAGAAATTATTTGAACATGGCAAAAAATAAACATGGAAAAGTGGGTAGGGGTGGCATTATACAGTGGAAATTTGGGATAGGTTTTTAATATCAGAGAGAGATGGGTAGGAAGTAGTAGAAGAAACGAGAAACGTAGTGATTTCACCCGGATATGCATTAACAGTTGTAATCGAAGGGGTTTGGTCTAATAGTAGCGATAAATCTTAATTGAAGTTTAATGTATAGAAATTAGTGTTTTCTCTGTCATTAATTATTTAGTTTAGAATTTAATGCTGGAATTTTCCCGAATGTTGATGCTTGTATTACTAACAAAGTTACAACTCCTACGTATCCCTTTGAATAACTTAGATACTTATTGAAAGTTATAGGTATCTTTAGATTGCTTTTGTGTGGTTATCATTCATCGGGTAGTTTTATTAACAATGTTTTTTTTTCCCTTGGCTAATTTCTAATACACTTTTCAATGACCTGTAAGTGCCTTTTGTTGAATCACTTTTAGGTCAATGGGTCACACTAAAGCGGAAACTGATTTTGATATGATTTTGGCGGATAACCAAGAAGAAAATGACGAAGGTAGCTCAGGTGGGTCGATCATAGATGGAAGAGGATCAAAGTTAAAGAAAGGACCCTGGACATCTGCAGAAGATGCCATTTTAGTCGATTATGTAAACAAAAACGGTGATGGAAACTGGAATGCTGTACAAAAGCATTCAGGACTTTCTAGATGTGGCAAAAGCTGTCGATTGCGATGGGCTAATCATCTTCGACCAAACCTTAAGAAGGGTCCATTTACCTTAGAAGAAGAAAAGAAAATTATTGAACTTCATGCCAAGATGGGTAATAAATGGGCTCGAATGGCTGCATTTGTAAGTTGATTTCCATCCTTGAGTAGTGACAGTTTTGATTAAAATACATCCATGCCATATTCGATCTTGCAATTGAACAATTATACTATCTTTTATTATTCTTAGGTGTGAGATAAGGGGATAGTAAGGGAATACGATACACAACTCCACCTAGAGTTCTGAATTAGTCCCAAGCAGAAAAACATATCATTTTCACCAACCATGCTATGACATGCAGCAAAGAACATTGACTTAATATCAGTCTGAAAATACTTAAATTGGGTCATGTGAGGCTGTGTTTACATACTTTTTTACATCTTACTAAAGTTTAGAAGAATAATATTTGATTTGTCCCTGTTGAATCTTGTAGCCACTAAATTATCTTAGGAAATTGCACAAAATGAATCATAAGCCCTCGTAAGTACTTCATATCAATTATTGTGTGTTACCTAGCATATTAGTTTCAAATATTGACCTGTGCTTTCTCTGCTCAAATTGGGAAATACTGCTGTACATCAAAAGATGAATCATATTGGTAGTATATGTTGTTTCCTTCTATTGAATAGATTCACATTTAAAAAGATATAGTCCTTCAATTAGTTTGTTTTTAAAATCAAGTTAATCTACAACAAAATTAACAACTAGATCCCCTTCAATACTAGTCGACCCCGCATCCTATATATAACTGTGTGGATCAGCGGAAACATCTATTTGTGAATTTAAGTCTATGATTTGGAGGCTCTGGTGTAGGGCTGTCAATGGATATTCGAAAAAAACTGAAATCCGTCTGCATCCGTATCCGAAAAACGGATAAATATCCGATATCTGGAAAAATGGATGCGGATGCGGATACGAAGACATCCGCATCCAAAAATTATCTGTCCGGTTTTTTTGCAAGATTATAGTTTAAATTATGTGTATTTTAGTGCAATGAAAGATATTTATTTATTGTTTTCTTAAGTTAGAAGTTCATATTATATGCACTAAATGCATATTAACTACTCAGAACTATTTATTATCATCATATTTGTTTATTTTTAACACTTTAATAATCAATGGAACTAAAAAAAATTTACGTTAAACTAAAATTTTCCAATTATGTTTCTTGATTTATCAGTCGTTAGCGGATAGGATAATTATCCGATGTCCGTCCGTATCTGTGGATGCAGATATCCGATATCCGAAAATGATTTCGGATATGGATACGGATATGACACTATCCGCATCCGAAAGTATCCGTTGACAGGTCTACTCTAGTGTTAATTGGTAAAATGCATCTGTTAGTAAGTGCTTTGATTAGTCTAAATGAATGATATTTATTTTCAGTTTAACGAATTACACCCTTTGGCTAGAAAAAAAAATCTGCTCCTATCGAATTCCTAGTACAATGCGTGTTTGCTGCTAGGTGGTTATGGCACATATAGATGCATTGCTAACTGAAGTTTGTGAAGTAATACCAAGTGCTAAATGTTGAACATGTGTTGGAGTAAATACGAGGTTCAAGAGATTGTACACTAGTGTTTACTGGAATCACAGTGTTATTCTGTATACTAACATTGTCTGCTAATCACATTTCTCAGTTACCTGGGCGCACAGACAATGAGATCAAGAACTACTGGAATACTCGCACCAAAAGGCTCCAGCGTACTGGATTACCACTTTACCCTATTAATATTTCAGCATCCGACGAAATTCAGCAGGGATATAAATTTGGGGATTATAAAGATGTTATGCAAACTGACTTTTGTGCATCACCAGAATTAACATCATCTTTTTACAGTTTACCTTGTGCACCAGAAACATCATCAAATAGCATGCTACTTCAAGGTTTTGGATCTCAAAGCCACAGCGAATTTCTAGGTCAATCAATAGACCAATGGTACCGATCAATCCCTTCCACTACGGATGATGATATTCCTATGCTTAGTAGTTTCTTCAATGGGTCTAGTGCGAAAACTGAAATGCCCTTGGAGTCAAACAATCATTATCATGATGGCAGCCATGCTGTACTAACAAATGGCAACAATATCTCTAGCTCCGGGCATAATATGGTGCCTGTGAAGCCAGAGCTCCCTTCACTCCAATATGAATGTAACAATGAAACTGAGATAAGCTGGCAAATAATCGATGATACTGTTAATGATTATATCCAGTCTCCTTTAGCTGTTTCAAGTCTTTCGACACTCTCTGAATTTTCTTTATCTGAGAACAGCGGTCTGCTTGATGATGTAGTTCTAAAGTCCCAGAAAATTCTTAGTGGGGATAACTCTCCTTATAGTATGGGCTTCAAATCTTCTTTAATGATTCCTAGTGATCTGATGGATAGTTCTGGATATAATGGTGTATGTGATGAAGAATGCTGCTCAATTTCTCCCTTCAGCACCCCAGATGCAACTGTATTCAGTGACTTCACCCCTCTACTTATTGGAAGTTCGGGTAACAGTCTTACTTCTGCTTGATATTTAGTCTAGGATTAATTGCAACGGGAAAAAGGTAAAGGAACAAAATCAATCAAGATATTAAATTCACTTAAGTCCATAAGTTTTCTCTGTTTGCTGACACTCAAATGAATACACTCAGTAGAAAGTGTAAATGAGATTCTTTCTTTACAGGATTGTATATTTGCTCTTGGTCGTCGGGACCTTTCTGTGCTAGGCCTGCTTTTGCACGCGCACCCACACCCCCCACCCACCCACACAACCCCCCCCCCCCCACCAAACCCACCCATGCATGCACACGCACCTGTGTGTGTGTGTCTCAGATGTGTGTTTTATTTCTTTAGTTTGGTTCAAACTCTGCACTTTCATCTTTACAACTTGGTTATTTGTGTAGGTTCAGCCACAATGGAGAAAGACGGGAAACAAAGTCCAGCAGAGAATATACGCCCAGATGCATTGCTAGAGTCTGCATGTTTCTTTAATTGCTCTCCAGATGAGACTGAGATGAACAATGCATTAGCACTTTTAGGTACCTATGAAGATGAACAAAAAGCCTCACTGAACGAAACAACCTCGCCATTCAATGGTGGAATGATGCTTGATTCTTCTTATTCATGGAGTAATATGCCTAGAATGATGCTTGATTATTCTCATTAATATACTATGCCCAGTGCTTGTTGAATTCTTGAAAGTTCTTGAAGTACTGATTGTAATTTAGACTATGCTTTGTATCATTTGTAGCACAAATTTTCACAAGGGGCCTTGGTATTACTATATAATTATGACTGATGTGGTGTTTAAATTTATTATTATGGTTGTGAGACCTGAACTGAGATACTGATTGTTCCACTTTAGTATTGCTGTATTTTGTATCTTTTTATTTTTTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020253654.1	4.9e-92	transcription factor GAMYB-like
Swissprot	Q0JIC2.1	6.2e-76	OsGAMyb
trEMBL	A0A5P1FM11	3.5e-92	Transcription factor GAMYB

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G06100.2	35.69	2e-58	224	ATMYB33;MYB33	myb domain protein 33

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G02558	AT5G06100.3	552	247	26	1	485	1	511	35.69	2e-58	224
AfisC5G02558	AT5G06100.2	552	247	26	1	485	1	511	35.69	2e-58	224
AfisC5G02558	AT3G11440.1	562	276	23	1	485	1	548	34.70	3e-58	223

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	40	87	54.7	7.6e-15
PF00249.28	Myb_DNA-binding	Domain	93	136	54.9	6.6e-15

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009411	P	response to UV
GO:0009414	P	response to water deprivation
GO:0009555	P	pollen development
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009751	P	response to salicylic acid
GO:0009789	P	positive regulation of abscisic acid-activated signaling pathway
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009809	P	lignin biosynthetic process
GO:0009860	P	pollen tube growth
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009909	P	regulation of flower development
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0043068	P	positive regulation of programmed cell death
GO:0043565	F	sequence-specific DNA binding
GO:0080086	P	stamen filament development
GO:0080091	P	regulation of raffinose metabolic process
GO:0080167	P	response to karrikin
GO:0090406	C	pollen tube
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network