result

Gene information

Detail information of AfisC5G03408

Location

Gene	Chr	Start	End	Strand
AfisC5G03408	chr5	619361098	619365260	+

Sequences

CDS

Protein

Gene

>AfisC5G03408
TACCCCTATAAGATTTTGTATTGCATGATAAGTCTAATGTGTTTTCATTGCATGCTTGGTTAATCATTATATTTCATTTATATGTGAGTTGATATACGTTTAAGTATATGTATTATTGTTTCTTTTCATTCTCATTTCAGCTCATCTTTGAAATATGTAATGCAGGTTGTAGTAATTGTTTTGTGTTTGTTCCTAGCTTAGGCATAAACAATGAATATGTAACCACATCTTCCTCTAATCTAGTTGACTATCATCCTTTATATACAGATAATGAGATAATATAATTGCTAATCTTTTCAAATTGTTTTCTGTAGAGAAATAATTAGGAAGTGAAGAGAAAGAAGACTAGTGCTAGGCCAGATAATTCTTCAAGGCCCAGCATGCATTTGCTCCACAACACACTTTGGGTAATTAGTTCATGATTGTTTTACATTGGCACTTCTTGTTACCTTAGTAATAAGCTTTGAAGCTAGGACAGATATTATTGTTGAGTTGTGTCATTGATAAATTCTTACAGAAAATAATTTGTTATTATTTATGTTTTGCCTTTTGTCTCAAAGGTGGTGCATGTCTAGTGTTGTACAAGCTTTCTCCTTCTCCTGTTATCTATATATTCTTTCTACTCTTCTCCGTTACAGATTATATACTTTATTCATACCAGCATTTCTTATTATTTATTCAAAAACATATATAATAGATATTAATTTGTCACTATCAGTAGCGGTTGGAGAGGAGGTGGTGGCGGTTAACTTTTTTCCCAGCACTCCCGCCATTGCTCCTGCATCATTATATATATAATATATATAGGTTAACTAGACTTTCTGTGCAATCTATCAGAATCGCTAGCTAGCTAATTTCTCTAGCTAGCTATCGATAGAGAAAGCCTTAATATTATATATTTGTGTGTACATGTATATACCAACTCTATTGCTACACTGAATTGCGTGTTTATGTTTGATCGGTTCTTTTGCATTGAAGAAGCAACGGAAGAAATTAGACAGCAAAAGATATCATCTGATATTCGTTCTGTATAAGAAGATAATTTGAAGGAGACCGAATTCTAAGAAAGAAAGAAACAGAAAGTCAAAACTTATATCAATCTTCTTCAAATTAGCATTGTAAGTTATGATCTCTCTTATGAAAGTCATTTTAGTTTTAACTCTTGACCCTGGTTATTGTATTTTGATCAAATATTATGTTTTATTATATTAGCACATTCCAGGATTAGTATTTCCACAATTGATTGAGTATATTTTTCTGTCTATATCTTACAATTTTCTTGTTAATATTTGATTGATATTACTCTATTTCTTACCTAGCATACAAACAAGTACAATAATTTTGGCATTCATGATTTTAGATTGGCAGGGATAACACAGAAGAAAGAAATCGGAGAACATGAATAGTTTCTCCAATGTTCCACCAGGTTTTCGATTCCACCCAACAGACGAAGAACTTGTCGATTACTACCTTAGAAAGAAAATCGCTTCAAGAAAAATCGACTTAGATGTCATAAAAGACGTTGATTTATACAAGATCGAGCCATGGGACATCGAAGGTATGCATATTATAACATTTGTAAATGTTGTTTTCCTTTTAAAAGTAATTAGAATACTGAATCTACATTTTCACATGTTTAGAGAAATGCAAGATAGGCGTGGAAGAGCAGAGCGATTGGTACTTCTTTAGCCACAAAGATAAGAAATACCCTACAGGTACTCGAACTAATAGGGCAACCACAGCAGGATTCTGGAAAGCTACAGGAAGAGACAAACCAATTTATTCGAAAAACAACTTGGTCGGCATGAGAAAAACATTAGTTTTTTATAAAGGTCGTGCACCAAATGGCCAGAAGTCAGATTGGATCATGCATGAGTATCGATTAGAAACTAATGAAAATGCTGCTCCTCAGGTTTTACTCCAGTTTATCATACAATACATAGAGGATAAGATATATGCATGCATAAACACTGGTAGTGTGTGTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGCTTCCTTCTTAATACGTTTTAGAAACTTAGGCCAGGAGTTCACAAGTTTATATGGGTCTTATATCAAAAGATCTAGCTGTCCTAATTAGTTGCTACATTTTAGCATATCCAACAGGCAAAAAATGTATTTAAATGCATATCTGGACCATTTATCTTTTGAGTCCTTGACCTGAAGATCCATATCAACTAATGAATCCCTGTAGTCGTTTTTAAACCAAAACAGATGATTTAAATCCACATAATTAGATATGAGACGTTTTGTAAAATACCCTTATTATTTATCTTAACAGATAAATACATTTTTTGAATTTCATATTCTAAATTAATCCCCTAAAATTTACGAAAATAAAATCATGTACGAATTCATCACAGTAAAATTAATAATTTAAGTCATAAATCGAAATTTAAAATCTTCAAATTAAGCGTAACAACGACTATTCAAGTTGCTTGCACTATTTAAAATGCAATGTAAAATGAATTGAAAAAATATACTTAATTGACTATACTTTAAACATCTAGTGTCTTTGTATTATTTAGATACATGAAATATATCATGTTTTTGAGGATAATCAAAGTCATTTTAGCAAAAAAGATATAAATTTGAAAGCTTATGTAATTTGCAGTATAATAATGCAATGAATCGAATCAGTTACATGTAGTTTGCACGTAAAAAATGCAATGTATGATAAATGCAACCAACGTTGCATGATACAGTATTATGAACACATTTTAGTTTATTACATTTTTCCTCGTTCAGTATGCTATTTCAACTAGAGGGAATTAGTTTAAAGGAAAAACATATGGTCGATTTTAGTCCAAAGGACACAAGTTTTAAAACTTAGTTTGAAGAATACTGAATGTTATATTAATATAGCATCATATAAATAAGAATAATATATTAAACTCGATTAAGATAAACAGAATGCTAAATTAAACTATCCTCGGATGAACTACACTAGATGAACTAAAATAACATTCATTTTCAGTTAAAGAAATGTCGACTTAAATATAATTACACATATATAACGCTAAGTTTATATAATTACACCTGTACAAATGCTAAGTTCATATAACATTTGTTTTCTTAGTACATATGACATTTGTTTTGTGTGATGCTGTATTAATATAGCATTCGGTGTCAAGTTTCGTCCTTCATTCAAAAATGTGCCTTAAGTTTTTCTTTCTCCCTATCTCCCTGTTTTGAATAATTCCAAGTGGGCGATTTCAGTATTGAAAAGGCTGAAGGGGTTTCAGGCATTTTTAAAAAGAAACGGGGAGAAAAACATAATTTAATATGCTCTGAATCATGTAGTTTATATAACCAACATTTCTGCACTCGAACATCTAAATACTTATCATCTGAAGTCTTCAGGAAGAGGGATGGGTAGTATGCCGCGTGTTCAAGAAAAAACTAACAGCAACAACAACACCAACAATGAGAAGGTTTGGCGAATACGACTCCCCTTGCGCATGGTACATTGACGACAACAACTCCTTCATGCCAAACATTGACGCCTCGAGAAGTCTAATGCCAAACATCGGTTCATACAACCAAAACATCTTCTCCTCTTGCAAACCAGAGTTCAGTGAACTTCACTACAACATGATGATGCCTCAGGATCCTAACTTATTTCTCCAACTCCCAAACTTAGAAATACAAACTAACTACATCAGTCAAGAAAATACCATCACCGACACTGAAGAGCACGTCACAGACTGGAGAGTTCTCGACAAATTCGTTGCATCGCAACTTAGCCATGATGAAGTTGTCATTAACGCCTCGAAAGATAAACAAGAAGCGGCTTCTGACCATGCTTCCACTTCGAACTCTAGTAACCAAATTGATAAATGGAAGTGAATTACTGTTTGCTTATGTTGCATATAGAAATTATTGTTGCTAATCGTAGGTTATAGGCGTATATGTACATAATAAACTGGAATATGACTTATTTCAGACAGTAGGCTGGCTGGGTCGCGAGCTATCCTGCTGTTAATAATGTGAAAGATGAGAGTTTCATTTTCATGATTCTCATTTTATTATATGTATATGTATATGGTCATCTGTTATATGATCCATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008812366.1	4.7e-109	NAC domain-containing protein 7-like
Swissprot	Q9FWX2.2	3.5e-93	Protein VASCULAR RELATED NAC-DOMAIN 4
trEMBL	A0A8B7D3J6	3.4e-109	NAC domain-containing protein 7-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G12260.1	52.89	1e-99	359	ANAC007;EMB2749;NAC007;VND4	NAC 007

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G03408	AT1G12260.1	380	93	12	1	305	1	369	52.89	1e-99	359
AfisC5G03408	AT1G62700.1	360	85	11	1	299	1	344	55.00	6e-98	353
AfisC5G03408	AT5G66300.1	285	104	9	6	271	11	286	53.68	2e-82	302

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	8	135	100.1	8.4e-29

Gene Ontology

Accession	Ontology	Name
GO:0000398	P	mRNA splicing, via spliceosome
GO:0003002	P	regionalization
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003723	F	RNA binding
GO:0016020	C	membrane
GO:0050832	P	defense response to fungus
GO:0005829	C	cytosol
GO:0005682	C	U5 snRNP
GO:0005685	C	U1 snRNP
GO:0005686	C	U2 snRNP
GO:0005687	C	U4 snRNP
GO:0005732	C	small nucleolar ribonucleoprotein complex
GO:0009531	C	secondary cell wall
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009735	P	response to cytokinin
GO:0009737	P	response to abscisic acid
GO:0009741	P	response to brassinosteroid
GO:0009809	P	lignin biosynthetic process
GO:0009825	P	multidimensional cell growth
GO:0009835	P	fruit ripening
GO:0009901	P	anther dehiscence
GO:0010029	P	regulation of seed germination
GO:0010047	P	fruit dehiscence
GO:0010200	P	response to chitin
GO:0010455	P	positive regulation of cell fate commitment
GO:0044212	F	transcription regulatory region DNA binding
GO:0010981	P	regulation of cell wall macromolecule metabolic process
GO:0015030	C	Cajal body
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019013	C	viral nucleocapsid
GO:0042542	P	response to hydrogen peroxide
GO:0042803	F	protein homodimerization activity
GO:0043068	P	positive regulation of programmed cell death
GO:0043565	F	sequence-specific DNA binding
GO:0045491	P	xylan metabolic process
GO:0046540	C	U4/U6 x U5 tri-snRNP complex
GO:0046982	F	protein heterodimerization activity
GO:0048527	P	lateral root development
GO:0048759	P	xylem vessel member cell differentiation
GO:0048829	P	root cap development
GO:0051091	P	positive regulation of sequence-specific DNA binding transcription factor activity
GO:0071004	C	U2-type prespliceosome
GO:0071013	C	catalytic step 2 spliceosome
GO:0071365	P	cellular response to auxin stimulus
GO:0090058	P	metaxylem development
GO:0090059	P	protoxylem development
GO:0090400	P	stress-induced premature senescence
GO:1900057	P	positive regulation of leaf senescence
GO:1901348	P	positive regulation of secondary cell wall biogenesis
GO:1902074	P	response to salt
GO:1904250	P	positive regulation of age-related resistance
GO:1990110	P	callus formation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network