result

Gene information

Detail information of AfisC5G03580

Location

Gene	Chr	Start	End	Strand
AfisC5G03580	chr5	653970761	653974018	+

Sequences

CDS

Protein

Gene

>AfisC5G03580
ATGCCTAACCCTACCGCGCCTAAAGCTTCGAGTTTCGCCATGACGTGCAACCTTTTGAGTCAATTCATCAAAGAAAACGGCCGTGCTTTTGGAGATCTTGGTCTCGGTAGATCCATTGATGCTTCGATCGGTATGCTTCTCTTCTTTTTTTCGTCCTTTTGTACGAACCTTTTGTTATTATTTTTGGAAATTAATGATTTGTTTTGGATTTTTAGGGATGAATGATGTGCGCCGGGCACCAACTACAATGAATTTATTGCCATGTGTGGATGTATCGGAAACCAGTACTGAAGGTAGACAAAAGGCTGTTAAGTCTATGGATTTGTTCCCCCAAATTTCTGGCTTTGGGGCAAAAGAAAACACTAATAACCGGTCAGTGAATTATTATTATTATTATTATTATTATTATTATTTTCAGCATACATATACCTTTGATTTTGCATGTTTGGCTTCTGTGCTTCTCTTTGGATTGTTTGTGATGTACAAATTTGAAACAATCTGAATTTAAAGCTCCGTCTGTTTAAAATACTGAATTCTGACTGTTGAACAGTGTAAATGCTAATGGTTGAAGTCTGTTTGCATTCAACATTCAGAACAAAAACCAGTATATGGTATTCATAACAAAAAAATAAGAAAAAAAAATGTTCCGAATAATTGTCCGAATAGATGGTTTTATTCAAAACACGGACAAAAAACAAACAATATAGATATAAATCAGAAGTTGGATTTAGAACTTCTGATTAAAAGCAAACACAGCCTTATGTATGTAACGACTGTGTTCTAATTCAAGCAAATTACAAACCTGAGCTCAACCAATTTGATTTTACATATGTAACATATCATATACTTAAGTAAAGGGACCTAGAATAAGAATTCTTAAGTAATGTGAATCCTCTAGTAATAAAATTTTCATATAACTTTATATAAACTTACAAACTCCGTTGAAAAAGCTATGAATCCTCTAGTATTGTACATCATATATGTTAAGTAAAAGACCAATAAAAATTCCTAACTAAAGTGAATTCTCTAGTAATGGAGTTTTCATTTAAGTAAAATGACTGCGTTTTCTCTAAGCTGATGATTTGTTGATATGCATCATGTACAGTGAACAGGAAAAGAAGCCATTGACGATATTTTACGGTGGTAAAGTTCTGGTTTTTGACGACTTCCCTGAGGACAAGGCAAATGATTTGATGATGCTTGCAGGGAAAGGATGTGCAAATACTAAGAAGGATACTAATTTTGTGCCACCAGTCTCTCCCTTGCCTTTGCCATCCACTGCTCTGCCATCCACTCCTTTGCCAACTGTGCAAGCAACGCTCCCTCCTCGGCCCACCCAGGGTGCTACTTCAGGTAATAATAGATCTGGCTTTTTTATGTCATGAAATTTGACTTATTGTGTTGGTCAAGGTTGAATTTCATTAACTTCTATGCAAAGCAGATTGTGTGCCAACTTGATATATTTAGCTGGTTGAATTTGACTTGTGAGCAATTTGCACATGCTGTTAAACATGGTTGACATTGAACTTAGAAGGGTGCTATTATTATTAGTACACCAATTTTATATAAGTTGGTTTTAAGTTATCTTTCATTAAGTGATACATGAAAATACAGCAGGGATTTGAATTTTCATTCACTTCTTTGAAAAGTAGAATGTCAAACTGGTATATTTTGAAATGCAATTGCAAACAACTTGTACATACTATTAAACATGGTTGATATTGAACTTAGAAGGGTGCTACCATTAGACCATTGCCAACAAACCTGTTCACTTACCCTCTCTCTTTTACTTTTACATTGAACGAACAAGCTCTGCAACCAAAAGAGAAAAAATCAACCACAGGCCAGATTTTTAAAAAATTCACAAATAAATAAAATGGCAAAGAGAATTGCAAATATTAAACAAAACGTTAAAGTCTTTGCCATTTTATTAAATATGCCGTTTTATTAAGTTTGTAATAAAACAGACTTTTATTAAAAAGAAAGGGGGGGTGGGGGGGGGGGCAAAAAATGTGTCGTTTTCACCTATTTTGCAATAAAACGGCAAACTTTTTGCCTTTTTATCCACTAGTTTCTGTTCAGTTCACTAGCGACAGACTTAGATTAAACCAATTATGGACAATTAAACAAGTCATATCTGGTTGCGCTGTGACTTGTTCAGTTCATGCTAGTTTATTTTATTTTTTAGTTAATAGAACAGTAGACAATACGGTAGGGAAATGAATTTTCTTTTCTCGACAGAAGGTGACTTGCTATGTCTAAAAATCATGCTGTGAAAAGTTGGTGTCCCCTTGGAAAAGTTGATATCCTAATAGTAAACCCCAGTTTAGAAATGAAAGAAAACGAATGTTTTATAACACAATGTTTCTTGTGTTGTAACATCTATAATTAATTGGTTGTCCATTTTTTAAGAATACATATGACAATGTTTTGTATTATAGTGTAGGATTATCATTGTGTCGTAAGTTGCAACAAAGACTCATATGGTTCATTAAAAAAAAATCTGATTTACATGAAACAGTTGCATGTGAATTGTCTAGTTCATTAAATGATAGCAATCTATTGAATTAAATGTGGCTCAACCCATGAGATAGACATCTTGTTTGGCAATATCATGTGGCTGCTTATGTATCAGTCAGATATTGTTTGGTTTTGTTAGTGTTTTGATGGCTAATAGTTGGCTATGATGTGTTTGGCAACAGGTCTTCCAATTGCAAGAAAAGCATCACTTCATCGATTCCTTGAGAAAAGAAAGGAGAGGTTAGCAGTACTCTTGCACTATACAAATTCTTCATTTATAAGCAATCAATCACAAGTTGATAGTACTTTAGTGTTATTAATCATATATATTATTTAAGGACATTTTTAGCATACACCCAAGTCCCTCCCAAATTTCTTTCGAAAAATACATCTTATTTTCAAAAAAGCATATGAAATTTAAGTGGTTATTTGATTAATTTTACTAACCTTAACGTATGCTTTCAGAGTATATGTCCATAACCCATAACCGTCTGCAATACACGTCTTAGATTGTGATTTTTAAATTTGGAATTGGAGAAGTAAAAAAGAAACGGTGTCTAAAAGGAACGTAAAACAAACAAGTTTTATAAAGAAGGATATGTCCCTAATTTCCATTTATTTATTTTATTTGAAATTAGGGTTATTGCGAAGGCACCATATCAAACGGCCAAAGCCAAAGAAGCGAACGCAGGGGAGAATCAGCCATGGCTTGGACTGAGTTCTGAGCCTAGCACATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_004958300.1	6.1e-37	protein TIFY 10b
Swissprot	Q8H395.1	5.6e-35	OsJAZ6
trEMBL	A0A8T3ARY0	6.1e-39	Protein TIFY

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G19180.1	36.63	2e-31	132	AtJAZ1;JAZ1;TIFY10A	jasmonate-zim-domain protein 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G03580	AT1G19180.1	243	122	8	8	227	19	252	36.63	2e-31	132
AfisC5G03580	AT1G74950.1	237	111	10	11	222	17	246	39.66	2e-31	132
AfisC5G03580	AT1G72450.1	222	121	9	1	207	1	211	33.78	1e-21	100

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06200.11	tify	Domain	98	130	59.9	9.6e-17
PF09425.7	CCT_2	Motif	181	206	55.0	4.7e-15

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0042742	P	defense response to bacterium
GO:0005634	C	nucleus
GO:0009555	P	pollen development
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009908	P	flower development
GO:0031347	P	regulation of defense response
GO:0097659	P	nucleic acid-templated transcription
GO:1900067	P	regulation of cellular response to alkaline pH

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13464	JAZ; jasmonate ZIM domain-containing protein	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network