result

Gene information

Detail information of AfisC5G04062

Location

Gene	Chr	Start	End	Strand
AfisC5G04062	chr5	754150760	754155352	-

Sequences

CDS

>AfisC5G04062
ATGTGCAATAACATACACACAGTGGCGAACCAAGGCGACTCACCCGACGATATAGACCGCTTCTTCTCCAACGTCGAGGATGCTGAGCATGGCGCCGACGGTGGGGATGCGGGCCGCGTGGCTGGGTACGGAGGGCAGGATCGGGATTTCAGCGCGATGGTCTCGGCTTTGACGCACGTGATGGGAAGCGATAGTGCACGTGATGCCCAGAGTGCAGGCGGCGTTAAGAGGGAGAGGGAAGATGTTGCTGGGCCGGGTACTGGGCCCGAGTCTGCTGGGAAATATTACAGAGGGTTTGGGAGCTTCGTCCATTTTCAAGGGGAAGCGTCTTCTACAAGCTTGGTTGATCAAAGCCATCAACAAATTCAACCGCATCCGAAACCCGAACCACCATCACCATCCGCATCACAGACCCCATCAACCGAAGCAGACCAATCCCCCCGCCGCCGCTACCGCGGGGTCCGCCAGCGCCCATGGGGCAAATGGGCCGCCGAGATCCGCGACCCGCACAAGGCGGCCCGTGTCTGGCTTGGTACCTTCGAGACCGCAGAAGCCGCCGCACGTGCCTACGACGACGCCGCCCTCCGCTTCAGAGGCAACCGAGCCAAGCTGAACTTTCCGGAAAACGCCAGACTTCACTTGCAGCCTCCACAGCAACTGTCAACTGCCACAGCTGCTGCTCCCAGGCATCAGTCCTCATCCATGCAGTCGTTTCCAGGCGATTATCTAGAATATTCCAGACTGCTGCAGGGCACCGGGAACTATCAAGCTGGGCTGCAACCCGGGTCCATTTTGGATCAGATTTTGTATGCTACTTCTAGTGCGGGTTCGGTTCCTTCTATATCGTTTGCTTCTTCAGCGTCGGCTTCTTCCTCGTCTACTGCTAGTAGCAGTAGCAGCGCATCGTATTACAGTGCGCAGTTTCAGAGACAGCCTTGGGATCATTCTAGTAGATACCAGCCGCCACCGCCGCCTCCTCCTCAATGA

Protein

Gene

>AfisC5G04062
AAACAACCGCCTCAATGCTATTTATGTCGGTATCTGTGTGAACCCCATATAGCCTGTATTGACTCTTTACCCTTTCAACCTGAACAAATCGCCAAATTGCAAAACGGAACTTTTCTTTCCAAGTTACTTAGCGGCGGTGGTTATTACGAAACACGTTCGCGAATTCGATTTGGCCAGCTACTAAGTCTTCCATCTCTCTATATATTCATATCTCATTTCCAATATTCAAAGGGTTCGTCTGTAAAAAGTACCGAAAAGGAAGAAAAAATAAAAAAGAAATCGTACATATTTGTTGGTACATGTGCAATAACATACACACAGTGGCGAACCAAGGCGACTCACCCGACGATATAGACCGCTTCTTCTCCAACGTCGAGGATGCTGAGCATGGCGCCGACGGTGGGGATGCGGGCCGCGTGGCTGGGTACGGAGGGCAGGATCGGGATTTCAGCGCGATGGTCTCGGCTTTGACGCACGTGATGGGAAGCGATAGTGCACGTGATGCCCAGAGTGCAGGCGGCGTTAAGAGGGAGAGGGAAGATGTTGCTGGGCCGGGTACTGGGCCCGAGTCTGCTGGGAAATATTACAGAGGGTTTGGGAGCTTCGTCCATTTTCAAGGGGAAGCGTCTTCTACAAGCTTGGTTGGTGAGTCCTCTTTCTTCCTTCTTATTTTTTTACTGTTGCCTAGAATGTGTTTCCATTTATGCTCATATTGAAAAATATCATAGGTTTAATCATCTCTGACCTCGTTTTTACATTATATAATCAAGTGTTTTCAGCATGTCATTATGTACACAAATGCATGCCTTCAGTAGTTCTAAATGAACACAAGAAACCAGTACATACACATAAAATTTAGTAAGTGTTGATGGAAGGATTAACATAGAAGAGCTGAAACAGAAGATGATAAATCTGAGACATTAAGGAATATTTTTGTTCACTAGCAATTTGAGCTATTAAAAACTCTTTTGTCCATATTATGATATTGGAAGAAAGATGAGCTGAAAACAGGAAACACAACAAATTGCTTACCTTGTTGGATTTTATGGCCTTTATTCTTTGTCAATCTCAAATGATGGAATTAAGGAAATTTTTTGTTTTTTAGCATTTGTATTTGCAACATTTGAGGTCAAGAGATAAACACTAGCTTTTAGCATGCCCTTATCTTGTTGCAAAGGGTTAGCTTCTTAGGACCCATGTCTTCCAAAAGTGATAATATATTAATATCTAGCTTTCTCCTCCACAAGAAGCATCTAGGATTCTAGATATCTTAACATAAACTCTTCCTTTGCATTCATCTTCAAACAATATTTGCGTTCTCTCACATCTTTAAAAAACCTCTTTCTTTTTTGTATGTATAAAAAATGAGTACCAAAAGTATTCAAAGTCTCATAAAATACACCAAAAGCATGACACATGTTAAGAGTCTTAAGACCAAGAGGATATAAGTAGCTCATCGTCTAATCAATTTCCCTTGTGAATAAAATTCTGTCTATTTTAAATGTTAAAAAATCAACTAATTCAGAGGTTTAATTCTATTTCCCCATGTCTCAAAAAATCTTAGTCATTCATCGCAATTAATCGATGAATTAATGCGGTGCACCACATTTGATGAATGACTAATGATAAAAAATGAATGGATGAAATCATTGTAACAGAAGATGAAGCAGTTAGTTAGGATTTTATTTGCTAATCTAGTGTGATATATGATTAATATTGTCTAGTTAGTGTATTACTATCCTTTACAAACTGTAATTTTAGTGTGATAACGCTAATCTACACGTGTAATCGTGTACAAAGGAAAGCTAAAAGCGTTTTAATCATTAAAAATGTTGATATCGTCACTCAATCAATCTCTTTCTCTTGGAAGTTCTAAGTTTGAACACCTGTCTTTTATATCTTGTACTACTTTATTGCCATCTCTCATGTGCGTCCAAATTGGAAGCCTCTTATGTGTCAATCTTTCTTTGCCCTTGTAATCACGTATACCTTTACTCTCATGGACTGTTAGGTAAACAATCATAGTTGAAAAACTCTTAACATAAAAGGAATACCAGATTTTGTATAAAACAATTTAAATGACAATAGAGATGTCTACTAAATGGGATTCAAAGAACCATGAGTAATTATGAATACACAATAGGTATTTTAGTAAATCACATATAGTCTTCTTCAGGGGTAGCTTATGACGTTGGTTGCTAAAAATTATGAATTCTTTTGTTCTTAATTTTATTTTTCACATCAAATTCAATAGTGTCAATGTTATTTATTGATTTACAATTTTTTTTTAAATAATAAACATAGTTAACATTTTTTGTCATTGCAAATAAATTCAAAATTTGAATACATCTAAAAAGGAAACATAAATTAAGGTGGGAACGATGGTTAAACGAAAGAAAAAATTAGGAATAAGTGTGAAAAGGTGAGAAAATCGTCAATGGTAGAGAAAGTAGTGAAATTACAAAAGAGAACTTTTGTAAAACACAGTATTTTAAGTTTTCAAAATACACAGTCACCCTTTCTAAAAAAACTTTAAAAAAAAAGATATTTTTCAGTTTCACCATACTGGCAGAAAAATCTGTAAATATTTGCACTTTAGAAAATAAATGTTTTTATCATTGGAACATGTGATTAAAGTTCAGAATTTTGAAAAAAGACGATTTTTTGTTCAAAAAAATGGGTATCACTTACGAAACGGAAACAAGGGACGGATCTTATTTTTCACACAACGGCACAACTTTGGTAAAAAAATTAATTGAAAAATAACGAATCCTTATAATTTGGAGAATTGATTCAAAAATTTAAGTTGCTAACTCACAATGAATTTAGGAAGTAGGATCAGATGCTCTCCTACTTTACTAGAGTAGGATACTCTATTTCGTATGGAACACCACAAATATGCAATTAAAAGGTATATATTTACTAGGTAAGTTTTGTCTAAGATCATTCGCAAATTTCAAAAGATATCAAGTTTTCCTCTCAAAAACATGTTCTACTAAACACACTCAAAATTATTTTCGTCGTATTCTTTTCCTTTTTTTCCACAATTTAAATTATATGTTCAACTTAATCTATACAAATATGGAGAGAGAAAAAAAATAGTTTCCCTTTCCTTTCTTTTCTTTTTGAAAATTTTCGCATTTTAGTGCAAATATTTGGAAAAAAAAGTACCGAACTGTACATTTTTGAACAAAAATATTTCCATTAAAAGTTACAAATTAAATTTTCGAAAATAAGTCCAAGAGTATTGATATAAAAGCCCATTGGCGACCATTATTCCGAAACTCTTTAGAATAAGTAATTTTAAACAGCAGTTTACAAGTAAAAATATTTAGATGTAATTTGGCTTATAAGTAGAATCGTTCAAAAAGTTGATTCTCAAAATTTTATTTATTAACTACTTATCTAAGTTATTTATAAACACTAAAATTAAAATAAGCTACCTGTAATTACTTTTGACTATTTATATATGGAGTTCCCAAACATGCTCTAATGATTTATGTTTAGTGCTTATTGAGACTACAATTGCATTCCTTTTCGGTTAACAAAACCAGATATAACTATAAAATGCAACTATACGTATTATGTAGTTATGCACAGTTAACTACTATCCATGCACTTCTTAACATACATCTCTTATGCAACAGATCAAAGCCATCAACAAATTCAACCGCATCCGAAACCCGAACCACCATCACCATCCGCATCACAGACCCCATCAACCGAAGCAGACCAATCCCCCCGCCGCCGCTACCGCGGGGTCCGCCAGCGCCCATGGGGCAAATGGGCCGCCGAGATCCGCGACCCGCACAAGGCGGCCCGTGTCTGGCTTGGTACCTTCGAGACCGCAGAAGCCGCCGCACGTGCCTACGACGACGCCGCCCTCCGCTTCAGAGGCAACCGAGCCAAGCTGAACTTTCCGGAAAACGCCAGACTTCACTTGCAGCCTCCACAGCAACTGTCAACTGCCACAGCTGCTGCTCCCAGGCATCAGTCCTCATCCATGCAGTCGTTTCCAGGCGATTATCTAGAATATTCCAGACTGCTGCAGGGCACCGGGAACTATCAAGCTGGGCTGCAACCCGGGTCCATTTTGGATCAGATTTTGTATGCTACTTCTAGTGCGGGTTCGGTTCCTTCTATATCGTTTGCTTCTTCAGCGTCGGCTTCTTCCTCGTCTACTGCTAGTAGCAGTAGCAGCGCATCGTATTACAGTGCGCAGTTTCAGAGACAGCCTTGGGATCATTCTAGTAGATACCAGCCGCCACCGCCGCCTCCTCCTCAATGATTTTTTCTTTCTTTCTTGTGTATGTGTTTATATATAGCTTTTCCACGAACTATGATATTTTTTGGAATATATACTTAGTTATACTTTTTTTTTTTTGGCTTCATTTGTTCCACCGCTTTGTTTTAGTAAAAGGTTTGTAATTTGTAAACTTGTTAGTGCTGTAAGAGACTGTAGTTTGCATGTGTATGCTACTGGCACGTTTTATTTTCCTTGTAGAGGTCTCGCTGCCTGTGCAATTCACGTGGAATTTAATTGAAAAATTGTTCAATATTGTATTCAGGAAATTATTATAAAGGACAAAATTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008785849.1	9.0e-42	ethylene-responsive transcription factor ERF110-like
Swissprot	Q70II3.2	3.1e-31	Ethylene-responsive transcription factor ERF110
trEMBL	D6MKM1	1.3e-45	Transcription factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G13330.1	52.99	3e-28	122	Rap2.6L	related to AP2 6l

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G04062	AT5G13330.1	134	38	4	144	259	32	158	52.99	3e-28	122
AfisC5G04062	AT5G61890.1	85	27	1	128	212	68	151	67.06	9e-28	120
AfisC5G04062	AT2G33710.1	100	38	1	121	220	40	136	59.00	5e-27	118

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	150	199	49.4	3.7e-13

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0001944	P	vasculature development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0050832	P	defense response to fungus
GO:0005730	C	nucleolus
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009749	P	response to glucose
GO:0009751	P	response to salicylic acid
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0009864	P	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010105	P	negative regulation of ethylene-activated signaling pathway
GO:0010200	P	response to chitin
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016604	C	nuclear body
GO:0019760	P	glucosinolate metabolic process
GO:0034059	P	response to anoxia
GO:0043565	F	sequence-specific DNA binding
GO:0051301	P	cell division
GO:0070483	P	detection of hypoxia
GO:0071456	P	cellular response to hypoxia
GO:0071497	P	cellular response to freezing

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network