result

Gene information

Detail information of AfisC5G04448

Location

Gene	Chr	Start	End	Strand
AfisC5G04448	chr5	816799100	816800144	-

Sequences

CDS

Protein

Gene

>AfisC5G04448
ATGCCACAAACACCTTCAACAAGATGGTGTCCAACACCAGAACAACTAATGATACTAGAAGAGATGTACAGAAGCGGAATCAGAACTCCAAACGCCTCACAAATTCAACACATCACCGCACACTTGTCGTTTTATGGAAAAATTGAGGGCAAAAATGTGTTTTACTGGTTTCAGAACCATAAAGCAAGGGACAGGCAAAAGCTGAGGCGTAAAATTAGCCGGCATCATCAGTTGCTTATTCATGGGCATGCCAACGCGGGTAGTGCTACTTCCCCAACTGCGCAGTTTCATAGTCTGGAAGATCAAACTGCAGTTTGTCTTTCTCCTACTTCTCCTGGTGCAGCCACACCACTTCACTTCCTCACTCATCAGGTCTGTTTTAATGTTTTAATGGTTTGTACATTTAATAAACTACTGGAATTCTGCATATTTTCTTACATGCTCTAATTGAATAATTTAATTAGGAATGTAGATTGGGCTACAGATTTAATGCATATTTAACTTGTTCATGTTTTTTATGAACATCCTATATCTAGGGTTTTACAGACTTCAGTGCTATATACAAAACTTGTTCATATGTCAAGTCAAGGCTGCATTGCCTCTCATAAACTTTAGTTGTCACATGCACATTCTTCAAGCAATTTGTTCCAGTTATTTACCAACATGACATTCGTAACTAATCACTGTGTATCTTCTCCAAAATCATGACTATCTATCTATCTATTAACTAATTAAACATATTTTGACTTTGTTCAAAAGTTGGCTATATATTATGAATATTTTGATACAATGGTTGTAGGGAGGGGCTTATGATCAAGGGCAAGTTCAAGGCTTGAATTTGCTTTCCAAACTGGAAACAAGTTATGATGGAATAATTCACCAAACAAACACAAACACAAGCAGCGGTTATAACTGGATGACGATGATGATGGATTGCAACAAAGAACCACCAAAAACACTTGATTTATTTCCTACAAAAAGCAGTGGACTCAAAGATGAATGTGGCACTTCTATTTCCTCCTCTTGCTCTACTTCAACCAACTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020274850.1	3.3e-58	WUSCHEL-related homeobox 3A
Swissprot	Q70UV1.1	3.8e-35	Narrow sheath protein 1
trEMBL	A0A804K1X0	1.2e-49	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G28610.1	39.67	2e-35	145	PRS;PRS1;WOX3	Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G04448	AT2G28610.1	242	83	6	6	191	6	240	39.67	2e-35	145
AfisC5G04448	AT3G18010.1	79	29	0	2	80	70	148	63.29	2e-25	112
AfisC5G04448	AT1G46480.1	64	18	0	7	70	89	152	71.88	4e-23	104

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	6	66	64.8	4.2e-18

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001944	P	vasculature development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0007165	P	signal transduction
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008284	P	positive regulation of cell proliferation
GO:0009536	C	plastid
GO:0009733	P	response to auxin
GO:0009908	P	flower development
GO:0009942	P	longitudinal axis specification
GO:0009943	P	adaxial/abaxial axis specification
GO:0009947	P	centrolateral axis specification
GO:0010067	P	procambium histogenesis
GO:0010078	P	maintenance of root meristem identity
GO:0010654	P	apical cell fate commitment
GO:0010865	P	stipule development
GO:0043565	F	sequence-specific DNA binding
GO:0048825	P	cotyledon development
GO:0051301	P	cell division
GO:0080167	P	response to karrikin
GO:0090451	P	cotyledon boundary formation
GO:1902459	P	positive regulation of stem cell population maintenance

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network