result

Gene information

Detail information of AfisC5G06640

Location

Gene	Chr	Start	End	Strand
AfisC5G06640	chr5	1228965325	1228967995	-

Sequences

CDS

>AfisC5G06640
ATGGAACCACTGGATTTGGGCATTAATTTTAGTCTAGCTACAACAAAAATAATCCAAAGTTTAATGCAAGATGGTTCGTCAATCCAAGACCAGGAGCGAAAGATTAGAAAAATGGAAGAACAAATTAGAAACCTTGAAGAAGAAAGGAAAAAGGTCGAAGTCTTTAAACGCGATCTTCCTTTTTGTAAATTTCTTCTTAATGACGTTATTAAAGGAATGAAGATCGAGCTCGAGAAATGCAGAAGAAGAAACGTTAATGGCTTGGAAGAATTCATTCCTGCAAAAAGTAGTAAATCGGAAGAGGAAGAAAAGCATTTAAAATTTGAAAACGATTGCAAGGATAAAATGAACTGGATGAGTTCAGTTCAGCTATGGAGCGACCATTACAGCAGACGCAACGATGATGATAACAACGATAAGAGTACACAACCGAGAATCATTATGGCCAAAGCAGGATCAAATAGGGATGCGATCGCCTCCGATGTTGGGTTACCGGATCTGTCTTTAGTTCCATATGCTGCTCCTGCCACAGCACCACCAGCTGCAACATGCCACGTGTCAGATCCTGGTGGTAGCCATGTCAGTATTCATTCTCAGCAGCAGCTACAGCAGGCTTCTCGAAAGGCCCGGAGGTGTTGGTCACCGGAACTTCATCGGAGATTTGTTGCTGCTCTTCAAGAACTTGGTGGTGCCCGAGTAGCAACACCAAAACAGATCAGAGAGTTGATGAAGGTGGATGGATTAACAAATGATGAAGTTAAAAGTCATTTACAGAAGTACAGATTATACGCAAGAAGAGAATCGAACACAAGAAGTGAAACAAATAATGGCAGTGTTATGTTAATGGGAGGATTATTGATCGACAATGAGCAAATGTATGCTAAAATGCAGCAAACTGAATCACCTCAAGGACCATTACAGTTCACGTCTTCATCTCGAGCAGTGACTTCTGTTACTAATGGCGATAGCTGTGACGATGATGGAAAGTCCGAAAGTTGTAGCTGGAAATGA

Protein

Gene

>AfisC5G06640
GAAAGATACTGCAAATTCATTTATGCCAATGCAAATTAATTGCAAAACACAAAATTAATTCCAACAAGTCCTAGTTTTTTCCACTTTCCTCTTCCTTCCGTTGCCTTTTTCCCCTTTATATATCATCCTCTCTATTACCTTCAGCCTCAATTTTCTACCCAATCAATCCACACAAATAATTAACTATTAAAATCATAGATTATAGGCATCAAAACAATATGGAACCACTGGATTTGGGCATTAATTTTAGTCTAGCTACAACAAAAATAATCCAAAGTTTAATGCAAGATGGTTCGTCAATCCAAGACCAGGAGCGAAAGATTAGAAAAATGGAAGAACAAATTAGAAACCTTGAAGAAGAAAGGAAAAAGGTCGAAGTCTTTAAACGCGATCTTCCTTTTTGTAAATTTCTTCTTAATGACGGTAATTACAGTTTATCTTTTTGTTCTTCTTCTATGTACTCATTTTTTCAGATTTTTTTTAATGAGATTTGAAATATGATTGCAGTTATTAAAGGAATGAAGATCGAGCTCGAGAAATGCAGAAGAAGAAACGTTAATGGCTTGGAAGAATTCATTCCTGCAAAAAGTAGTAAATCGGAAGAGGAAGAAAAGCATTTAAAATTTGAAAACGATTGCAAGGATAAAATGAACTGGATGAGTTCAGTTCAGCTATGGAGCGACCATTACAGCAGACGCAACGATGATGATAACAACGATAAGGTCAAAACATAGTTAACCAAAACTGAAATTCCAAAACTTTTTAAAATAAATTTGCTTTCTCCGAACTGAGAATTTTTTGAATACAGAGTACACAACCGAGAATCATTATGGCCAAAGCAGGATCAAATAGGGATGCGATCGCCTCCGATGTTGGGTTACCGGATCTGTCTTTAGTTCCATATGCTGCTCCTGCCACAGCACCACCAGCTGCAACATGCCACGTGTCAGATCCTGGTGGTAGCCATGTCAGTATTCATTCTCAGCAGCAGCTACAGCAGGCTTCTCGAAAGGCCCGGAGGTGTTGGTCACCGGAACTTCATCGGAGATTTGTTGCTGCTCTTCAAGAACTTGGTGGTGCCCGAGGTATACATACATATTTTTTCTTTCTACTAATTTCAAAATTTATTTTTTCTTTCTAGTTTTTTTATAGAAACAATTTCATTATATTTGTTTGCTAATTATATGAATTAGAGCATCAGCGCACTATTTTTGGCTTGTTCTCAGTTTATTTTTTGATGGAATCATCCTTTGATAAATTTGAAATTCTGAGGATTAAGGAATTTATTTTGCTCAGTTTTGAATTAATACAGATATGATATAAAAAGAAAAGATTTGATCTTTTGTTGGTTAAAATTTATGTCCTTAAGTTGATACTAGAAGTTCATTGACAATGTCTTATCATTCTAGTATTTTACCTAGTACTTATAAAATGTTTACGGACAGTTTTAAATTCAATAAAAATATTAAAATTATCCCCTTTTGCACTCACTAAATCTTGTGTCATTCAACAAGGTATACATATGTGTATACAAGTGTAAGTTTATCGCTGCAACAATGTCTTTAAATCTGTTTGCTAATTAACATCAGTTACACTTTTTTTCATCGGTTTTAACTGTATTTTTGATAGTTTTCGATGGAATTAGTCTTGAGTAAATTAGAAATTCAAAGTTAGTGGATAAATTAAGTCTTTATCCAAACCCTTCAAGTTACAAAAGCAACTTATGTGCTTATTTTCTTCTACTTATTATAAGCTATTATCCAACACCATCAGAATCTTTACTTTTCTTTAATTATCTCTTTAATTATCTCAAGAAGAACATTTGGTCTGCACTGTTTTTAGTTGTCTTAACTGTAATTTAGACAGTTTTTTTATTGGGCTACTAGAGTAAATTAATTCTGTTCAGTTTTTGATCAAGTACAGATAAGATTCTACGGAGTGTTTTAAAATTGCAATCAACATATTTTAAAATTTATAAACATGTAAAATTTGGTGCAGTTTTGAACTAAATATTGTGTGAAAATATTTCCTATGCAGTAGCAACACCAAAACAGATCAGAGAGTTGATGAAGGTGGATGGATTAACAAATGATGAAGTTAAAAGTCATTTACAGGTAATTAAACAATCTCTAACTAAGAAAAAAGGGCTAACTAATGATTAATTCTTTTTTTCTTCATAATACAGAAGTACAGATTATACGCAAGAAGAGAATCGAACACAAGAAGTGAAACAAATAATGGCAGTGTTATGTTAATGGGAGGATTATTGATCGACAATGAGCAAATGTATGCTAAAATGCAGCAAACTGAATCACCTCAAGGACCATTACAGTTCACGTCTTCATCTCGAGCAGTGACTTCTGTTACTAATGGCGATAGCTGTGACGATGATGGAAAGTCCGAAAGTTGTAGCTGGAAATGACTTTTGACTTTTAAGTTGAACTTTTAAGCATTTATAGGCTGAGGCGAGTTCAGAATTGGTCATGTATATAGCAGCATTTGAGATGCTTTTTTGAGGATATCATATGAGTTACATATATGAATTGTTGTTCTTTTTCTTTTTTCTTCTTTCGAACCGTGCGAGGACCATGTCTATATGTATAGTATTTATACATTATGACTTTGCTCTTCAATGAAACTTCTGAATACAAATGTTTCTTTTTAAATATTA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020275529.1	6.5e-72	LOW QUALITY PROTEIN: myb family transcription factor EFM-like
Swissprot	Q5VRW2.2	2.8e-27	MYB-domain transcription factor NIGT1 homolog 1
trEMBL	A0A8B7C640	1.7e-58	myb family transcription factor EFM

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G03500.1	36.93	8e-41	164		Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G06640	AT2G03500.1	306	130	11	35	294	33	321	36.93	8e-41	164
AfisC5G06640	AT1G25550.1	333	165	11	21	314	1	324	36.04	5e-39	158
AfisC5G06640	AT1G68670.1	344	159	11	30	314	6	340	34.01	7e-37	151

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	210	261	30.2	3.3e-07

Gene Ontology

Accession	Ontology	Name
GO:0000160	P	phosphorelay signal transduction system
GO:0005634	C	nucleus
GO:0007275	P	multicellular organism development
GO:0009409	P	response to cold
GO:0009736	P	cytokinin-activated signaling pathway
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0044444	C	cytoplasmic part

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network