result

Gene information

Detail information of AfisC5G06805

Location

Gene	Chr	Start	End	Strand
AfisC5G06805	chr5	1265656271	1265657512	-

Sequences

CDS

Protein

Gene

>AfisC5G06805
ATGAAGTGTGATGAATTTGTTGAAGAGTTAGGAAAAAAGAAGCTTAGGCTTAGTAAGGAGCAATCCAGGCTTCTGGAGGAAAAGTTTAAAGAGCATTCGACTCTTAATCCTGTAAGTATTTCTTCATTTTTTCTACTTCTTATTATTCTTTTTCCCCCCTTTTTTTGAATTGTATGTATACTGATCATGTCTTCATTTGTCTGAATGAAGAAACAAAAGCAAGCTCTTGCTAAGCATCTAAATCTTCAGCCTCGCCAGGTAGAAGTTTGGTTCCAAAACAGAAGGGCAAGGTTGGTATTTTTACAAATTAATTACACGAATCTGTGTTATTAATGTCCTAAAGCTTATGGCATAATGAGTTATAAATATATATCCAGAATTAATTAAATTGAAATTCAAAGTTTTAGATGCATTCTTTCTGTTGATTAAATCCATATAATTTGGTTCAGTTTTTGATAATCTATTCCAAGTTTTATCAGTTTGAAATAGTTTTATTTCTCTCAAAAACAAAGTTTTGAATTTTAAACGATTGTTATAAATGTATATAGGGAACTGTATTTAGTTAATTGACCATGAAATAATGTTTATTTGCTCATGAATAATGACTTTTGTACATATTAGGATTCATATCATCCACCTACTATGACAAAATTCCTAGTATGAAATTTTATTCTATTTTTGAGCTTAGGAATGACATGTTAATTAAGGGTTGTTGGCTTAGTATGAAAAACTAAAATATTATGAATAATCCATGGTCACTATTTGGATTTATTGAAACGCATTCAGATATACTGTTCTGCTATGAAACATCCATTTTGAATTTGACCATTTTTATATATTTATTCTTATTTGAATGTTGACTATTATATATTTCCAAGGAAAATAAGTTAACTCTTTTATCATAAACAATTAGCTGTCTTTTGTTGCATTTTCACCAACTAAACATAACTTTCTTGAAATTACAGAACGAAACTGAAGCAAACAGAGGTCGATCGAGAATTCTACAGAAAATGCTATGAGAAGCTGACCGAAGAAAACCAGAGACTAAAAACCGAGCTGGAAGAGCTAAAGAAACTGAAAATGTCCTCTCCATTGGCAATGTACCTTCCCGTGGCGCCCTCCATTACAGTGTGCCCTTCATGCCAATGTGTTAATGGAGCAAGCGAAGGACCCTTCACTGTAGGACATACCGCTCAGTTCTTGAACAATAATAATGCATTTGCAAAGCCAACACAATGCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	OMO57456.1	9.8e-39	hypothetical protein COLO4_35373
Swissprot	P46604.1	2.0e-36	Homeodomain-leucine zipper protein HAT22
trEMBL	A5B626	7.1e-39	Homeobox domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G37790.1	66.13	5e-41	163	HAT22	Homeobox-leucine zipper protein family

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G06805	AT4G37790.1	124	38	2	4	124	114	236	66.13	5e-41	163
AfisC5G06805	AT5G06710.1	124	41	1	12	135	189	311	66.13	1e-40	162
AfisC5G06805	AT2G22800.1	114	36	1	11	124	111	223	67.54	2e-39	157

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	12	66	60.8	7.3e-17

Gene Ontology

Accession	Ontology	Name
GO:0000123	C	histone acetyltransferase complex
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0008283	P	cell proliferation
GO:0009506	C	plasmodesma
GO:0009585	P	red, far-red light phototransduction
GO:0009641	P	shade avoidance
GO:0009733	P	response to auxin
GO:0009735	P	response to cytokinin
GO:0009826	P	unidimensional cell growth
GO:0010015	P	root morphogenesis
GO:0010016	P	shoot system morphogenesis
GO:0010218	P	response to far red light
GO:0010321	P	regulation of vegetative phase change
GO:0010484	F	H3 histone acetyltransferase activity
GO:0010582	P	floral meristem determinacy
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016573	P	histone acetylation
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0043621	F	protein self-association
GO:0048467	P	gynoecium development
GO:0080127	P	fruit septum development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network