result

Gene information

Detail information of AfisC6G00025

Location

Gene	Chr	Start	End	Strand
AfisC6G00025	chr6	5634395	5635684	-

Sequences

CDS

Protein

Gene

>AfisC6G00025
CGAACACGAATTATACGATCATCAGAATCCGTAATCAGCAAAAAAGAAAATCAACGGTCAGGATAAACCCACCGACGACGATAATGCCCATACCTCACATCATAAACGCTGACACATCGTCGCACGTGCCTCCTCACGTGCCTCCGACTTCCCCAATTCCCAGTCGCCGTCCTTTATATAATTCTATCATCCATTCAGATCCCCAATTCATACCAAATCCAAATAAATCAAACCAGGGTTAGGGTTTGCCGATGGATCGGAAGAGAACGCCGCCGTCACGAGGAGGGCCGAACTCGTCGCAGCCCTACAGGGAAGACTGCTGGAGCGACGGAGAGACGTCGGTGCTGATCGACGCGTGGGGGGATCGGTACATGGAGCTCAACCGCGGCAATATTCCTCAGAAGCAATGGCAGGAGGTCGCCGACGCCGTGAATTCCCGTCCGTGCGATGCGCGGCGTCCGCCTCGGACCGATATTCAGTGCAAGTATCGGGTTGATACGTTGAAGAAGAAATATAAGATCGAGAAGAATAAGATCGCTGAGGCTGGTGGGTCCTCTTTGAATAGTCAGTGGCAGTTTTATGATCGGTTGGATTACTTGATTGGTTCTTCCTTTACTCAGAATAGTTTTAATCTTAACAATAGCAATAACAACAATGGCAGTAAGAGTAAGAATAAGTCTGTGATGAATATGATGAAGCAGCCGCCCATGGCACTTCCTTTGCCCTCTAACCGTGTGAAGGGTTACCCTCTTCCTCCTGCAGCTATTGCTTGCAATGTGAATGAGAGCAACTATGATTCCGATTCCTCATTTTCGAATGATGCCAATAACAATGTTCGAAAAAGGGCTAGGGTTTCTAGCTATGTGAAGAAGGAGAAGGAGAAGGAGGATGATGGGATTGTGGAGATGTCGAAGGCGATTGGGAAGATTGTGGATATTTACGAGAAGGTGGAGATGGAGAGAGGCAAACAGATGATTGAATTGGAGAAGCAAAGGATGGAGTTTATGAAAACGATCGAGATTCAGAGGATGCAGACGATCGTTGACACGATCAAGATGATTACGAAGAGGAAGAAGAGTGAAAGAGGTAAGGATGATGATTTGTCTTCTGCTGCTCTTGGTTTGGCTGTTATGCCTAATTTCTTTAGTTAAATTTATATAACCAATAACTATATGTATGCATGAATGTATGTATGTTTAGATTTATGTTTAATGCGTTGGATTTAATTATGCTTTAACTAAATTGTTACATTTTAATGGAGTCCAATTATAGAATCTTTATTGCTTGATT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020678735.2	3.6e-45	trihelix transcription factor ASIL2-like
Swissprot	Q9LJG8.1	1.3e-28	Trihelix DNA-binding protein ASIL2
trEMBL	A0A8T3A0X0	1.8e-46	Myb_DNA-bind_4 domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G58630.1	33.33	4e-38	155		sequence-specific DNA binding transcription factors

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G00025	AT3G58630.1	324	166	9	13	298	10	321	33.33	4e-38	155
AfisC6G00025	AT3G14180.1	117	39	4	9	120	64	176	58.97	1e-31	134
AfisC6G00025	AT3G14180.1	106	67	2	175	275	304	409	32.08	1e-09	60.8

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13837.3	Myb_DNA-bind_4	Domain	21	114	86.6	9.8e-25

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005730	C	nucleolus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009733	P	response to auxin
GO:0009793	P	embryo development ending in seed dormancy
GO:0010029	P	regulation of seed germination
GO:0010431	P	seed maturation
GO:0044212	F	transcription regulatory region DNA binding
GO:0043565	F	sequence-specific DNA binding
GO:0048831	P	regulation of shoot system development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network