result

Gene information

Detail information of AfisC6G00323

Location

Gene	Chr	Start	End	Strand
AfisC6G00323	chr6	44728917	44730601	+

Sequences

CDS

Protein

Gene

>AfisC6G00323
ATGCCTGCAGAAGAGATTCTATCTGTACCAGAGATTTTGCTATTATTACTGGATGAACTTGGCACGTTGATTGATCTGAATGAAGGTATAATTGTGTTGTTCACATGCCATTAAACTCGATATTCAACTATATCATATAATCAATATACAGGGTTTTTTTATTTGAACCTTCTTTTTTCTTAGCTTGCACAATACTTTTATTTATATATTTTGATTTTGAAGGTTTGATCGTTGAATGAAATCATATTCGGATAAGAAACGATTATTAAGGCACCATTTTATTTTAAAAAAAAGGAGAAACATACAATTACCGTTTTGTAGAAGTGCTCTAATTTTGCTAACCATGCAATAATTTCCCCCCTAATTAGATTTCTGTCTCTCATCTATAATTTCAGTTGAGTGTAGCACAGCTAAATTTGTCAAGCCAAAGATTTTTGCTTGAGTTGTTTGAATACAAGATTTATTTGTCAAGTTTGCTTTATTTCTAGAGTAGACAAAATGATAATGCTATATAGATGCTAGGTTCAATCTGTCAAAGTCCAGAAGGAATCATAGATATAATATAGTTTCCTACTAATCAAGGTAAATTTGGCAAAGCTTCTATCCTTATTTTCTCACCTGTAGGTCATTGTGTTTTCGTTTTCACTTGACATAAACCATATTTGATGAATCTGGACCGTGATGTTCAGCAGTATGAAATATCCTTAAGAATATTATATAATACTAATATTGTTGGTTATTTTTTAGATTGGACTAAGATGACAATGGTTTTGGTTCGGAGATTATTCCGAAGGTTGCCGAAGAGTAGAATGTGCGGGTATTTTCTATTCCTTTTTTTTCATTTCGATACTTCATAGAAAACGACACCAGAACAAACAACAAAGAAAACTGGAGGAAAGAAATAGTACACATACAACACAAATTGTTTTTCTTTTCATGAAGTGGTGGTTGTGAAGGAAAACTGACATAAATGAGGTATTCTTTAAAATTGACCTTTGGCTTTCTGTTTTTCACTGAAATATGTATGGTTTGTAGTATCTTCTGTAAGTAACATATAGCACTATATAGTATCAGTTATATAAACCTGGTATTGAGTGCCAATTATTTGCAGATACATGTATTAACTATGAACTTGAGATTTACATAGCTTATCATTCTGGACATAGATATTTTTGTCGAGGAAGAGAATAAGATAAAAGTAATTGGAAGAAAAATGCCAATACCTCTTGCACCTTACCCAACTCCCGCTCCAATTTTACCTCCTAATGGTAATTCCTTATTTTTCCTTGCTTATGAACATCACAATAGTGTATAGTTCATAGATATGAAAAAGAAAACTAGGCATTCTTTCACTAGTCTGCAAACAACATCCATGTATTTTAGAAAAGAACTTAACCATGTAGGTTGGAAATACTATAATGTGCATAGTGATTTTCACCAAACAGATTTATAGAGCTCTGTGTTTCATATCACTTAATTGATATGCATTTTTCAAAAATAATGTAGGTGCACAAAGTCAGCTTGTGTGTTCGGGCTGTAGAAATTTGCTTGTGTATCCTGAAGGTGCATCATCAGTTTGTTGCGCTGTTTGCAATGCAGTCACATCAGTGCCTCCACCAAGTAATTTATATGTTTGTAATACTTGCCACGAAGCATTCTTTGAGACTGAAAGTTATACTATTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_018684715.1	8.0e-20	PREDICTED: protein LOL1 isoform X2
Swissprot	Q0J7V9.1	5.9e-20	Putative zinc finger LSD1
trEMBL	A0A0E0AJI3	4.9e-19	zf-LSD1 domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G32540.2	57.33	1e-14	75.1	LOL1	lsd one like 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G00323	AT1G32540.3	75	22	3	52	120	20	90	57.33	1e-14	75.1
AfisC6G00323	AT1G32540.2	75	22	3	52	120	20	90	57.33	1e-14	75.1
AfisC6G00323	AT1G32540.1	50	11	1	64	110	64	113	72.00	2e-14	74.3

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06943.9	zf-LSD1	Domain	70	94	42.8	2.9e-11

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001666	P	response to hypoxia
GO:0002240	P	response to molecule of oomycetes origin
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005576	C	extracellular region
GO:0005634	C	nucleus
GO:0055114	P	oxidation-reduction process
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008131	F	primary amine oxidase activity
GO:0009536	C	plastid
GO:0009862	P	systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104	P	regulation of ethylene-activated signaling pathway
GO:0010310	P	regulation of hydrogen peroxide metabolic process
GO:0010602	P	regulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618	P	aerenchyma formation
GO:0016575	P	histone deacetylation
GO:0034051	P	negative regulation of plant-type hypersensitive response
GO:0034052	P	positive regulation of plant-type hypersensitive response
GO:0045595	P	regulation of cell differentiation
GO:0048364	P	root development
GO:0051568	P	histone H3-K4 methylation
GO:2000121	P	regulation of removal of superoxide radicals

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network