result

Gene information

Detail information of AfisC6G00403

Location

Gene	Chr	Start	End	Strand
AfisC6G00403	chr6	53883328	53886466	+

Sequences

CDS

>AfisC6G00403
ATGGGTGACATCCACCATTACATCTACTTTACTTCTGTCTACCCTTCTATTCATATCAAACTGCCAATTACCTTTCCAGATACAATGGACAATAATTTTCAATTGCTTTCCAACTTAGTCTATGGTACCAACTGGAACACAATCAAAGTTCGAGTGGGAAGACTTTGGATTTTGGTCAGCCAGAAGACAAATGAACCTTACTCTCTAAACTTGCAACTTCTGGACAGAGAGGGGAATGTGAAAATGGCAGTTGTACGTAAGCACAATTTACATCGATTTGAAAATATGTTCGAGGAGCAGTCTGTATATGAGATTACCAGGTTCAACGTACAAGACTCGGATACAGATTTTAAGGCTATTGACGAGCCATTAACTATTGTCATTAGGGTAGACACTCAAGTAAGGAAGGTACATGAAGATACAAACAACATTCCTCGCTACAAATTTGGATTTGTGGATGATGACATACTTCCCTCTCGAATTAACAAGAAGGGTCAGCTTACAGACATAGGAGGCATTCTCTATGCTATTACCCCTGTTCTTCAGATTACTAGACAAGATGGAGCTCAATCAGTCAAAAGACAACTTAACCTTGAATTAACAAGGTTTTATACAGCTGTCTACCTACATTACAGTTTATCCAACATCGTTTTTTTCAAAATATGGAAAAAATACGTTGTTCATGCTACGATCACTAAATTGAGGACCTCTTCACCTTGGTTTTACATGTCATGCGTGATGTATAAAGGAACTGCATATCTTGAAGGAACACAATACTTATGTTCCAGATGCCACCAACCGGTGAAAGAACCTCTTAATAGGTTGATATCTCTTTACCTTAGCCAAACTATCATGGTTATATATTTTGATTACCTATTCTTCCGCAGGTATCGTTTGAACATCGATATTGTTGATGGTACTACCTCATCAACTGTGACCGCGTTTGACAAAGAGGTAGAGAAACTTCTTGGTGTCAAAGTGGATGAAATGATCAAAATCTCAAAGATGGAAAACGGAGATAAGAAGGTGGAAAACATTTTTCAACAACCAGTAGGAATAGACGCTATTTTTGAATTTAGGCCGAACAACTACGAAATGAATAACAAAGATACAATCCTCGCAGCTCGAAAAATAACAAAGAAAAACGTGTCTTCTCAATTATCTTCTTTGGCATCACAAGCCGTTGATGATGTTCTCAATGAAAGTACTGAAAGCAATCCTCCTTCATCAACTACAAAAAAGGGTGGAAGAAGAGAAATTTACATAGTTGATGAAGAAAATGTTGGCAGTCGACTAGACTCTGTCCGTACTCAAGATGGAGAAAAGCGCAGGAAGAAATAA

Protein

Gene

>AfisC6G00403
ATGGGTGACATCCACCATTACATCTACTTTACTTCTGTCTACCCTTCTATTCATATCAAACTGCCAATTACCTTTCCAGGTAAATACTATTTCTTCTTTCCTGCTTACTCTGTTGATTTTATTTTACGTCTGCACACTTATTTTTTTACGTCATACTACCAAAAAAATTGAAAAATTGCTAACTATCACTGCTATGTTTTCTTTATGAAGATACAATGGACAATAATTTTCAATTGCTTTCCAACTTAGTCTATGGTACCAACTGGAACACAATCAAAGTTCGAGTGGGAAGACTTTGGATTTTGGTCAGCCAGAAGACAAATGAACCTTACTCTCTAAACTTGCAACTTCTGGACAGAGAGGTAAAATATCCATCTACATTTATTAACACCCAATCTATCTGTTCATTTATGTGTTTATAGTATATACGGACTGTCTTCTACAGGGGAATGTGAAAATGGCAGTTGTACGTAAGCACAATTTACATCGATTTGAAAATATGTTCGAGGAGCAGTCTGTATATGAGATTACCAGGTTCAACGTACAAGACTCGGATACAGATTTTAAGGCTATTGACGAGCCATTAACTATTGTCATTAGGGTAGACACTCAAGTAAGGAAGGTACATGAAGATACAAACAACATTCCTCGCTACAAATTTGGATTTGTGGATGATGACATACTTCCCTCTCGAATTAACAAGAAGGGTCAGCTTACAGGTTCGTCTACAATATTTTTGGTTTCAAACTCTCTTAACTCACCATTTGTCAATTGGAATAGTACTTAACCAATATTTTAACCGAATTAGACATAGGAGGCATTCTCTATGCTATTACCCCTGTTCTTCAGATTACTAGACAAGATGGAGCTCAATCAGTCAAAAGACAACTTAACCTTGAATTAACAAGGTTTTATACAGCTGTCTACCTACATTACAGTTTATCCAACATCGTTTTTTTCAAAATATGTCCATCTTACTTATAAATAATTTATGTTCCTTTATATGCTCAGTGGGAAATCATCAATTGTATCTCTTTGGTTTGAAAAAAAAATTTTGGTCGATGAGTCATTACTTCAAACATACTCCCATCCAATACCAATAGTTGTTACATCTACCTCAGTTTCTATTTACGCATGTAAGTACTTGCTTATTTAATCATTGATATAATAATTATTTGTTCACTGCTACAGGTACTGTGATGATTACATATCTACTACTTTAACTGCAGAATCGATAGTTTATGACTCCACTAAAGCAACCAAGATATACACTAATATAAAAGTCTCCCCCGTCTATGAATATCTTGAGAGGTATTTACTTAAACCTTATTTATACTCTTACTGCACTTACTGTATTAGCTCTGTTTATAATTTTTTGTCTGGTTTTAATTTCCTCCCTCAATACACAGTATGCCATCAACAAAAAACTGCTTCTTCTTAATAAGACTCCTTCTACTGACGAGAACGTTGATTTAGAAATTGTTCAGTCCACTATAGCACATCTTCAAGAAGAGGTTAGAGCTGCAAATTGTCAGGTATGTTTTTTTTCCTTCGTACGAACCCAACATTACGTTCATGATTACAATCACATTTGGCTATTTACATGATGCAGTTTAAACGACCATAACACTATACCTGCTTCCTACATATTATTCCCTCCTGTACTTTTTTAAACCATTATAAATTGTTTTTTATACCTTTCTATTATGTTGTATGTTGACGATTGGTAAATTTAAATTCTTTCTTTCGTTTTTCCCTTTACTTTCATTCTAACTAACTTTTCCATTGGATTTTAATATTCGATCCTTTTGCCTATTTGTTAATGTACTGTCTTATATGTTTAGGGAAAAAATACGTTGTTCATGCTACGATCACTAAATTGAGGACCTCTTCACCTTGGTTTTACATGTCATGCGTGATGTATAAAGGAACTGCATATCTTGAAGGAACACAATACTTATGTTCCAGATGCCACCAACCGGTGAAAGAACCTCTTAATAGGTTGATATCTCTTTACCTTAGCCAAACTATCATGGTTATATATTTTGATTACCTATTCTTCCGCAGGTATCGTTTGAACATCGATATTGTTGATGGTACTACCTCATCAACTGTGACCGCGTTTGACAAAGAGGTAGAGAAACTTCTTGGTGTCAAAGTGGATGAAATGATCAAAATCTCAAAGATGGTTATACAAATTCAGAAATTAATATTATCTTTACCATTACATTTTCACCATATTTTCATTCCCTTTATTGCTTTTGTTTTTCTCTGCTTCAGGAAAACGGAGATAAGAAGGTGGAAAACATTTTTCAACAACCAGTAGGAATAGACGCTATTTTTGAATTTAGGCCGAACAACTACGAAATGAATAACAAAGATACAATCCTCGCAGCTCGAAAAATAACAAAGAAAAACGTGTCTTCTCAATTATCTTCTTTGGCATCACAAGTAAAAATTTCGTGTAATTATATGTGCAATGATATTTGACTATATTTAAATTGTTAAAACACCTACCTTTTTTTTTTAATTTTTTATTTTATGATTTGTGTACCATATTTTAGACCACAACATTGACCGCACAAAATACAAACGTTGATAATGGTTTAACCCAATCCACCTACACCACTTCAACTATGTCTGATTACAAAGGAAAGAAACCGGTAATAAAACATTTGACTACTCTAACTAAGTGGTTGAAGTTGTGTACTCAAACTACTTATGTTCGACATTATTTTAAAATTAATATAGGCCGTTGATGATGTTCTCAATGAAAGTACTGAAAGCAATCCTCCTTCATCAACTACAAAAAAGGGTGGAAGAAGAGAAATTTACATAGTTGTACGTGCTGACACACTTTGCATTAACTAATTCTACCATTTATATAGTTTTAATTTATTATTATTTTCAACATATATTCCACTGTCAACTTTTCATTATAATACCGTACAAGTCCATATTAACCTTCCCATGTCTATTATAAAACTTTCCTGATCTTTGTTTTTCCATAACTGTAATTGCTGGTACCAAACTATTCAATGGTACTAAACAACATTTTTTTTCGTAGGATGAAGAAAATGTTGGCAGTCGACTAGACTCTGTCCGTACTCAAGATGGAGAAAAGCGCAGGAAGAAATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_023888237.1	3.4e-15	replication protein A 70 kDa DNA-binding subunit D-like
trEMBL	I1NV62	5.4e-15	DUF223 domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G08020.1	27.33	1e-09	61.6	ATRPA70B;RPA70B	RPA70-kDa subunit B

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G00403	AT5G08020.1	161	112	4	41	198	166	324	27.33	1e-09	61.6
AfisC6G00403	AT5G61000.1	161	111	4	41	198	190	348	27.95	4e-07	52.8
AfisC6G00403	AT4G19130.1	165	108	5	41	199	237	394	26.67	1e-06	51.6

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network