result

Gene information

Detail information of AfisC6G01173

Location

Gene	Chr	Start	End	Strand
AfisC6G01173	chr6	176056573	176059299	+

Sequences

CDS

>AfisC6G01173
ATGGTTTCTGGCACTGAAATAATGAATGATTTCCATCCAAACCAGTTGTTTTTAAACAACATAATAAAACCCGACAATTTCATTCAACAAGATCCGTATCTGAACCTTGAATCTTTAAACACCAATCATGAGAATATCATTCAATCTTCCACTACAATTTCTGAAGATGATTCTCATGATGAAATACTCTCCGATATGGCCCTCAATTTTATAAACCAAATTCTAATGGACGAAGACGATAAAGTCGATAGCTTTCATGAGTATTCAGCTCTTCAAGCTACCGAAAATTCATTCTATCAAATCATCAAAGAGCAATACCCCCCACCCGAATCAAATCACAGTTCAGAAAGCCCTGATAGCACCAGTGCAATTTACACCAATGTCAATAGTTTCAATAGCGATGGCAGTAGCAGCAGTATCGATATTTCAGACTTTGCATCCCAATCCCCATTTACTTCTTCTGCTACCTTTACCAACAGTTTTCAAATCTCTGATTTCATTTTCCAAAATATGCCTGCTTGGTGTTTCAACAAAGGTGTTGAAGAAGCCCGTAAATTTCTTCCTAGCGACAACAAGCTAGTCATCGACTTGGAATCTAACAGCAGCTTCTCATTGCCATCAAAACTCGAAAAGGAAAGAAATTCCTTTGAGCTTAAAACAGAGAAAGAAGAGGGACTCTTTTTCGCATCACGAGGTAGAAAGAATCACCATAGCGATGACTACGATTTAGAAGAAGGAAGGAGCATCAAGCATTCAGCACTCTCTCCCGAAGAGAGTGTAAGAACACCACTCTTCGATGATGTACTTTTATGCAATGGAGATAAAATGCCTAAAGCCATAAGCGATCTTCAAGATGCTTTACGTCATGTATCTCTTAAAAACTCTCAAAACAACCATGACAGCAACAAAGGTTCAAAAAATGGAAAAGGGCGAGGCAAGAAGCAACCTAAAAAAGAAGTAGTTGACCTTCGAACTCTTTTAGTTCACTGTGCTCAGATGGTATCATCCGATGACCAAAGAAACACAACTGAAATACTGAAGCAAATAAGACAGCATTCATCTCCTTTAGGAGACGGAACTCAGAGATTAGCCCACTATTTCGCGAACGGGATAGAAGCTCGCTTAGCAGGTACAGGGAGTGAGATATACAATTCATTAAAGCAGAAGAGAAGAAGCACTTCAGATTTCTTGAAAGCATACAAGCTGTTCATGGCAGCATCACCTTTCAGGAAAATAACATATTCCTTTGCCAACCAAACTATAATGAATGTGGCTGAGAATGCAAGCAGCATCCATGTAGTGGATTTCGGTATCTGCTTTGGGTTTCAGTGGCCTGCATTTTTTCAATGGATATCAAGGCGGGTTGGTGGGCCCCCGAAGATCCGAATCACAGGGATCGATTTTCCTCAAGCTGGTTATAGACCCGCTGAAAGAATTGAAGAGACTGGAAGAAGGCTTGCAGACTATGCAAAGACTTTTGGTGTTGATTTCGAGTACAAGCCAATTGCATCGAAATGGGAAGATGTTCGAATAGAAGATATTGAAATTAAGAAAGGTGAAATGCTCATAGTGAACTGTCTATTTCATGCTAGGTATTTAGCAGACGAGACAATGTCTGTAGAATCGCCCAGAAACACGTTTTTAAACCTGGTAAGGAGAATGAAGCCTGTGATATTTATTCATGGTATTCTGAACGGGTCTTATAGTGCACCGTTTTTCGTAACGAGGTTTAGGGAGGCATTGTACCATTTCTCGGCAGTGTTTGATATGCTTGAAACTATAGTGCCAAGAGAAGATGAGGAAAGGCTCTTGATTGAGAGGGAGATATTTGGAAGAGAAATTATGAATGTGATAGCATGCGAGGGCTTGGAGAGGATAGAGAGACCTGAAACGTATAAGCAGTGGCAACTGAGGACACTGAGAGCTGGGTTTCAGCAAAACCCACTGAGTAAAGAGATGCTGAAGAAGGTAAAAGAGAAAGTGACGGGGTATTACCATAAAGATTTTGATGTTGATGAGTATAATGGCTGGATGCTGCAAGGGTGGAAAGGGCGTATTGTCTTCGCGCTCTCATCATGGAAACCTGTCTGTTGA

Protein

Gene

>AfisC6G01173
AAATCTCCAAGGGGTATAAAGGGTACTAAACAACTTGTCCATTATGTAATACTTTTCAAAGACGATTGTTATTTATAAGGTGGGAACGCAGCACACAAGCACAGTTCATTGTTTGCTTTCTCCGCCACTATTTTTCTCCTGTTCCTCTTTTCAGGTACGATTTTCAAGCTTCACATTTCTTCCCTTCCAATTTTTGCTTATTGGTGCCTTAAAAGTATAATCTTCTACTCATTTCTTCTCTAATCACTTAAAAAAATAGTTCATTACTGATTGGGGGTAGATCCAACATTCTTTTAGCAATTTTCAATGGTTTCTGGCACTGAAATAATGAATGATTTCCATCCAAACCAGTTGTTTTTAAACAACATAATAAAACCCGACAATTTCATTCAACAAGATCCGTATCTGAACCTTGAATCTTTAAACACCAATCATGAGAATATCATTCAATCTTCCACTACAATTTCTGAAGATGATTCTCATGATGAAATACTCTCCGATATGGCCCTCAATTTTATAAACCAAATTCTAATGGACGAAGACGATAAAGTCGATAGCTTTCATGAGTATTCAGCTCTTCAAGCTACCGAAAATTCATTCTATCAAATCATCAAAGAGCAATACCCCCCACCCGAATCAAATCACAGTTCAGAAAGCCCTGATAGCACCAGTGCAATTTACACCAATGTCAATAGTTTCAATAGCGATGGCAGTAGCAGCAGTATCGATATTTCAGACTTTGCATCCCAATCCCCATTTACTTCTTCTGCTACCTTTACCAACAGTTTTCAAATCTCTGATTTCATTTTCCAAAATATGCCTGCTTGGTGTTTCAACAAAGGTGTTGAAGAAGCCCGTAAATTTCTTCCTAGCGACAACAAGCTAGTCATCGACTTGGAATCTAACAGCAGCTTCTCATTGCCATCAAAACTCGAAAAGGAAAGAAATTCCTTTGAGCTTAAAACAGAGAAAGAAGAGGGACTCTTTTTCGCATCACGAGGTAGAAAGAATCACCATAGCGATGACTACGATTTAGAAGAAGGAAGGAGCATCAAGCATTCAGCACTCTCTCCCGAAGAGAGTGTAAGAACACCACTCTTCGATGATGTACTTTTATGCAATGGAGATAAAATGCCTAAAGCCATAAGCGATCTTCAAGATGCTTTACGTCATGTATCTCTTAAAAACTCTCAAAACAACCATGACAGCAACAAAGGTTCAAAAAATGGAAAAGGGCGAGGCAAGAAGCAACCTAAAAAAGAAGTAGTTGACCTTCGAACTCTTTTAGTTCACTGTGCTCAGATGGTATCATCCGATGACCAAAGAAACACAACTGAAATACTGAAGCAAATAAGACAGCATTCATCTCCTTTAGGAGACGGAACTCAGAGATTAGCCCACTATTTCGCGAACGGGATAGAAGCTCGCTTAGCAGGTACAGGGAGTGAGATATACAATTCATTAAAGCAGAAGAGAAGAAGCACTTCAGATTTCTTGAAAGCATACAAGCTGTTCATGGCAGCATCACCTTTCAGGAAAATAACATATTCCTTTGCCAACCAAACTATAATGAATGTGGCTGAGAATGCAAGCAGCATCCATGTAGTGGATTTCGGTATCTGCTTTGGGTTTCAGTGGCCTGCATTTTTTCAATGGATATCAAGGCGGGTTGGTGGGCCCCCGAAGATCCGAATCACAGGGATCGATTTTCCTCAAGCTGGTTATAGACCCGCTGAAAGAATTGAAGAGACTGGAAGAAGGCTTGCAGACTATGCAAAGACTTTTGGTGTTGATTTCGAGTACAAGCCAATTGCATCGAAATGGGAAGATGTTCGAATAGAAGATATTGAAATTAAGAAAGGTGAAATGCTCATAGTGAACTGTCTATTTCATGCTAGGTATTTAGCAGACGAGACAATGTCTGTAGAATCGCCCAGAAACACGTTTTTAAACCTGGTAAGGAGAATGAAGCCTGTGATATTTATTCATGGTATTCTGAACGGGTCTTATAGTGCACCGTTTTTCGTAACGAGGTTTAGGGAGGCATTGTACCATTTCTCGGCAGTGTTTGATATGCTTGAAACTATAGTGCCAAGAGAAGATGAGGAAAGGCTCTTGATTGAGAGGGAGATATTTGGAAGAGAAATTATGAATGTGATAGCATGCGAGGGCTTGGAGAGGATAGAGAGACCTGAAACGTATAAGCAGTGGCAACTGAGGACACTGAGAGCTGGGTTTCAGCAAAACCCACTGAGTAAAGAGATGCTGAAGAAGGTAAAAGAGAAAGTGACGGGGTATTACCATAAAGATTTTGATGTTGATGAGTATAATGGCTGGATGCTGCAAGGGTGGAAAGGGCGTATTGTCTTCGCGCTCTCATCATGGAAACCTGTCTGTTGATGTATTGTAGTTGCATTTTTTTTGGGTTTCACTGAAGAGGAATATATATTGTTTTCTTACTGTGACGTGCTCTGATGTAGTGGTGGATGGAAGCTCATGAGTCATGCACATATAAGTATCTGTAACCGAGAAAAAAGAAAAAAGAAAAAACACTAATGTTATTGTAAGTTTGTAACGTAGTTCTGTTTCTGTCGTGTTTTCATGCCAAGTACTATGATTGATGAATGTATTGCTCTGGATGATATGCTAATGGTTATGCATTGATTTTGAATTTTTGTGTGATATAGTTATTGAATTTTATTAATGAAAATTATCTTGTTATCTGAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252505.1	1.2e-221	scarecrow-like protein 9
Swissprot	Q9XE58.2	3.0e-148	GRAS family protein 2
trEMBL	A0A5P1FEW5	8.8e-222	GRAS domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G07530.1	44.51	8e-160	560	ATGRAS2;GRAS2;SCL14	SCARECROW-like 14

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G01173	AT1G07530.1	692	308	12	68	695	87	766	44.51	8e-160	560
AfisC6G01173	AT2G37650.1	673	310	13	56	695	70	714	44.87	1e-157	553
AfisC6G01173	AT2G29060.1	675	310	14	58	696	51	694	44.15	7e-152	534

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	323	694	388.0	3.6e-116

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003723	F	RNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0010200	P	response to chitin
GO:0044434	C	chloroplast part
GO:0044699	P	single-organism process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network