result

Gene information

Detail information of AfisC6G01335

Location

Gene	Chr	Start	End	Strand
AfisC6G01335	chr6	207770430	207772869	+

Sequences

CDS

Protein

Gene

>AfisC6G01335
ACGTTGGGTGAATGAGATAGAAGCAGCGACATGAGCAAATTCTCCGAGTAGAAGCAGCGAGGTGAGTCTGTACTTGTTTGATGAATTAATTGATTAAATGATCTGATGTTTGTTGTTGTTGGACGCCAGTGGCATTTTGCTCCAGCTCAATGAACCTGTCGAGCAAACCTACGCTACAATTCCCAATAAATAAGGTATTTTTATCATACATTAGTTTGTGGAAAAGCTAGAAAAAGGAAAGTTTAATGCCTTGGGTGAAATCCAAAGAACAGTTTTGCAACTTGCTGCACCTCCTCAATTGGTATGTGTAGTATTTCTTATATAACAAAACTCTCGGTATGTTATATGTATGTCTGTACTTATGAAATGTATGTCTGTGTAATCCTTGATTTCAATATATATTTTCTTAACTAAATAATACATACAATCTATCAATGGCCTTGAGGAGTAACATAGTATAAAAAGTCATATCCTATACAATAGTTTTATAGAATTGTTTTTCTTTGACCATATTTCATTAATATAACTTAAATAAATGTAGGGTGTTTAAGGAATGCCCTCACCCAGACGACAAGCTGCGATTAAAGCTGAGCCAAGAGTTGGGACTAAAACCTCGTCAAGTCAAATTCTGGTTCCAAGACAAACACACTCAGATGAAGGTATCGTTTATGTTAACATACTAAAAAAAGTAGAGAATTTCAAAAGATAAAAAATAAAAATAAAAACGAAGAAAAACTATCAGAACAAAAATTACAGGTTGGAAATTTACATACTAGTCATGGATATATGTTGTGCTGTAGGCACAACAAGATAGGACAGACAATGCGATACTTAATGCTGAGAATGAATCCCTTTAAAATGACAATTACAGGCTTCAAGCTGCACTAAGAAACGTGATGTACCCTAATTGTGGCGGGCCTGACATTCTTGGATAAATGTCATATGATGAACAACAGTTCAGACTTGAAAATGCCTGCCTCAAAGATCAGGTATATTAATACACAATAAGTACCGCATATCTAATTCATCTGCAAAATAGATTTTGCATGATTTTTTAATATCGTGGTTCACTTATATCTTGGCAAATTCATTTTTTCAATAGCTCGAACAAATGTCTTACTTTATCTCTCGATACACAGGCCAAGTTCAGATGCAATTATTGGGGCCTACACAATCTCTGATGATGCCATCACTAGAGCTCAATATAAATACTTATTCAAGGCATTTCAACGACCAACAACAAGCAATGGGAGTTTGTAATGATATAGCTCCAGTTCAAAATAGTATTTTGATCATGGGTCAAGGTAAAGGATTGGCCTTAGATTTGGCTTTTACAGCATCTGAACACTTACTGAAGTTATGTACAATGAATGAGCCTTTGCGGGTTAATAGTAATGGAGGAATTGTTAATGAAGGCTTGGATTATGAAGAGTATAAGACATTGTTTAATTGGCCTGTTAAACTTAAGCAACAAAGTGAAGGAGTTAGGATTGAAGTCACAAGGGATAGCGGGATTGTTATGATGAATAGCATTACTTTGGTTGATGCCTTCTTCAATGCTGTAAGTTAAGGATATGTTATATACATTGCTTTTGGTACATGATTATGTATGATATCTATTTAAATTTATGTTTTGGATTTGTATTTCTAGAATAAGTGGATGGAGTTATTTTCTACAATCGTGAGCAAAGCGAAAACGTTGCAAATTATTGCTGAAGGGATATCTAGTCATGGAAACGGCTCTCTTTATTTGGTAAATATCAAACCTTTGTTCATACTTAATTTTTGTGGAATGCTGCAATATTGTTAGTGTTATGTCGAGACTTGATATATAATTTTGACTTGTGAAGATGTTTGCGGAGTTTCAAGTTCTATCACACATGGTGCCTCTACGTGAGGCTCACTTTCTTAGATATTGTCAACAAAATGTCAATGAAGGAACTTGGTTGATTGTTGATTTTCCTATTGATGGATTTCATGGACTCGAAATGTCCCTGACTCGTTATAGAAGGCGGCCATCTGGATGTATCATTCAGGACATGCCTAATGGTTATGCTAAGGTAAGTAGGCTTATCTTTTCATTTCATTTCATTATTTACTATTGGGAAATTTTACTTTTTCTTAAGACTCGAAAGACCAAGTTTTGTTTTACATCCCGAGGGATTTATGTTCCCTTATACATTTATATCTGATCCATAACATATGTATGCTAATAATTTTCTATGTTACAGTCACATACTCATTTCTGTCATATAATATGGTAAAATCAAAGACCTTTGATTTTTTTTAAATTATCTACAAGTGAGTGGGTCGAACATGGAGATGTACAAGATACCCAAGTCCATCAAATATTTGACAAACTTGTTAACAGTGGTGTTGCCTTTGGTGCAACGAGATGGCTCTCCCTCTTGTGAACATCAACAAGCACGGAGGAAATTAG

Functional annotation

Database	accession number	e-value	annotation
nr	ONK71940.1	8.0e-90	uncharacterized protein A4U43_C04F13970
Swissprot	Q336P2.1	1.9e-64	Protein RICE OUTERMOST CELL-SPECIFIC 3
trEMBL	A0A5P1F627	5.8e-90	START domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G46880.1	40.20	2e-53	206	HB-7;HDG5	homeobox-7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G01335	AT5G46880.1	306	140	9	7	276	217	515	40.20	2e-53	206
AfisC6G01335	AT4G17710.1	273	119	9	8	275	185	419	40.66	2e-48	189
AfisC6G01335	AT4G04890.1	287	175	8	1	286	164	439	34.84	2e-45	179

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01852.16	START	Domain	144	277	74.1	8.9e-21

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009828	P	plant-type cell wall loosening
GO:0009845	P	seed germination
GO:0009913	P	epidermal cell differentiation
GO:0010091	P	trichome branching
GO:0048364	P	root development
GO:0048497	P	maintenance of floral organ identity
GO:0048825	P	cotyledon development
GO:0090627	P	plant epidermal cell differentiation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network