result

Gene information

Detail information of AfisC6G01885

Location

Gene	Chr	Start	End	Strand
AfisC6G01885	chr6	314080336	314081832	-

Sequences

CDS

Protein

Gene

>AfisC6G01885
CCATAACACACACATCCTCTTCACTCCCTATATTTTCTCCTCTGACCTACCCTCTCATTTACTCATGTATATGAACCAATTAGTTCAAAACTCCTCAAAAACTTGGATTTTGCAAAAACCAACCATGAACAATCTCCAAATGTTTGAAAAGCCATTAACTCCTAGTGATGTAGGCAAGCTAAACAGACTAGTGATACCGAAGCAATATGCAGAAAAGTACTTTCCCCTTGACAATGAATCAGTGGAGAAGGGTCTTTTACTAAGTTTTGAAGATGAGGTAGGAAAGCCATGGAAATTTAGATACTCATACTGGACTAGTAGCCAAAGTTACGTGCTTACTAAAGGATGGAGTGGATATGTGAAGGATAAAAGATTAGATGCAGGTGACGTAATCATATTTCATAGAAGAGATGATCGTCTATTTATTGGATGTAGGCGTCGTGGTTCAAATGATCCAGCTAATAATGCAGCAAATGAAGCATTTTGTGTTGCTTCTAGTGGTTCTTATCTCACTCCATATCACTACAATAGTTCAGGTTTGAATCGATCAATGTTAAACATTTACTCTTAAATTATATGTAACTAGCACATTCTAGTAGAAAGTAAGAAAATTTTCACATGGATACCTTTGAATGAATGACTGCTTATTTGCACGGTAATGATACCGAGCTGTTTTCCAAATTATACAAGCAACTTCTAAAATCCTGCATTGCAGAAAGAAGTGTTTAGCTTATCAGTATGATAATTTAACATTTGTTCATCAAGTCATGAAAAAAGCTGTAACGCAAACATAAGAGACTAATGATAATAGTGTTCATGAATGCAGGTGAGCAGATAGCTAGTTCTTCAGAGAATCAATCAATAGCCAAAGCTGGAAACTCAAAAAAGTTCAGACTTTTTGGTGTTACTTTAGAGTGTGGTCCGGACCAGTACATGCACACTAATGCCTCATCTTCTCAACTTTAGTTGAAATGTAAGCCTGCGCGCAAAAACACACACACACACACACAGATTTCGAATTGGATAAATTGAGATTGAATTATGACATTCCAATCCTGGATTCTATGCATTTTATGTATTCAATACTAATTTTGTTACTGAATGTATTATAACAGATTTACAATCCATGTTTTTAACTGTTGGTGATAATGCAACAGGAAAACAAGTAGAAAGTGAAGGATAGATTTTTAAGGCACGTTTTACAAATGCTACCTACCAATCTTCTCAGTTTATGGTCTCTTTTACTCAAGTGGTCTATTAACTGACTCAGCAAGAAAAATGAGTAAACAAGAAATCCCTGGTTTTCAGGGCTCTTTTATTTATATTTATTACTCAAAATTTCTTCTCATTTGAAGATCTTGTTGTACGGAATATCAGATGAAACATCAAGCTGAGAAGGAAGTAAGTTAATATGGGTGGGTGGGTCACATGCTGCTAGCATTTTGTAATGTAATATCTTTTTGTTCCTAAGATAGTAAAATAATATTTTAAGTTTTC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020246232.1	2.3e-56	LOW QUALITY PROTEIN: B3 domain-containing protein Os11g0156000-like
Swissprot	Q8GYJ2.1	1.4e-45	Protein AUXIN RESPONSIVE FACTOR 31
trEMBL	A0A5B8I213	3.9e-53	B3 domain-containing protein Os11g0156000-like isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G06250.2	52.53	6e-47	183	DPA4	AP2/B3-like transcriptional factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G01885	AT5G06250.2	198	63	6	26	192	45	242	52.53	6e-47	183
AfisC6G01885	AT2G36080.1	172	52	5	26	191	37	195	58.72	1e-46	182
AfisC6G01885	AT5G06250.1	183	65	5	26	192	45	227	55.74	7e-46	180

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	27	126	96.7	5.5e-28

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009536	C	plastid
GO:0009741	P	response to brassinosteroid
GO:0009873	P	ethylene-activated signaling pathway
GO:0009910	P	negative regulation of flower development
GO:0010073	P	meristem maintenance
GO:0010358	P	leaf shaping
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0048527	P	lateral root development
GO:0048573	P	photoperiodism, flowering
GO:0080113	P	regulation of seed growth
GO:0080167	P	response to karrikin

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09287	RAV; RAV-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network