result

Gene information

Detail information of AfisC6G02070

Location

Gene	Chr	Start	End	Strand
AfisC6G02070	chr6	340619146	340620599	-

Sequences

CDS

>AfisC6G02070
ATGTTAGAAGGAAGACACGACGCAGAAGATGATCTCTTAACTCTTGGTCTAGGCATCAACGGCTCTACACACTCAAGGCCCATTTCCAAAAAAAGGAAACTAAATGATAGACATAAAAGCTGCTTGGACGACAAGTACTTATCATTGCTTCAAGCAAGAGATAAAATGCTACAAAATCACCCTTCAGGAAACAAGCAAGGAATCGTAGATGGCAAAGGGTTGCAACTTATCCACCTGCTTCTAATCTCGGCCACCTCTATCGATTCTAATAACACGAGCTCCGCCTTAGACTCGTTAACTAAACTATATTACAACGCTTCTCTTAAAGGTGAGCCTATACAGCGCGTCACTGCATATTTTGCGGATGCCCTAGTTGCTAAGTTATTGACACCAAAATCGTCATTCTACGACGTGATAATTGCTGACCCAATCCCACAAGAGAAATTTTCATCCTTTACTTATCTATATCGCGCTTCTCCTTACTACCAATTTGCTCATTTCACCGCTAACCAAGCTATAATCGAAGCTTTTGAACATGATGAGTTGAAAAATGATAGTAAGTCCTTACACGTCGTTGATTTTGACGTTTCTTATGGGTTTCAATGGCCTTCTTTGATTCAATCTTTATCGGATAAGGCAACAAATAAGTCCAAAATTTCGTTTAAATTAACTGGGTATGGTGAAAATGTTGAAGAGTTGGAGGAGACCGAGGTGAGGTTGTGTAGTTTTGCCAATGGGTGCCCTAACGTGGAGTTTGAGTTTAATGGCGCGCTTCAAGAAAAAGTGCCTTTAAGTAAAATCAAGATTATCAAGAATGAGACTTTAGTCGTGAATGTGGTTTTTCATCAACTTGACCATAGTACATTGAGGGATATACATGCATTGAATCCATCATTATTGGTTTTGGTGGAGAAAGAAGAAAGTATAACTTCTAGAAACTTCCTATCAAGGTTCATGGAATCTTTGCATTACTTTGCCGCCATGTTTGATTCTTTGGATGATTGTTTACCTATGGAAAGTGTTGAGAGGTTGAGCATTGAGAAGAACCATTTGGGAAGGGAGATAAAGAAGCTGGTGGTATCTAATGATCAGGATGTAAACGAAAATAATATAAGTTGTAATAACAAGTTTGGAAAAATGGAGAGTTGGAAAGAGAGAATGAAGAAAAGTAGATTTGAAGGTGTAAATTTAAGTTCTAGGTCGGTAAGTCAAGCAAAATTACTAATAAAAATCAAGAGTCATTGTTCGAATACGAATGAAGGTGGGTTTAGGATTTTGGAAGGTGATGATGGGAAGAGTTTGGGGTTGGGATGGCAAGATCGTAATTTGATCACTGCTTCTGCATGGAAATGTATGATGCCTTGA

Protein

Gene

>AfisC6G02070
AAAAAATAAAATAAAACCATAGAAACTCAATATCCAAAGAATGTTAGAAGGAAGACACGACGCAGAAGATGATCTCTTAACTCTTGGTCTAGGCATCAACGGCTCTACACACTCAAGGCCCATTTCCAAAAAAAGGAAACTAAATGATAGACATAAAAGCTGCTTGGACGACAAGTACTTATCATTGCTTCAAGCAAGAGATAAAATGCTACAAAATCACCCTTCAGGAAACAAGCAAGGAATCGTAGATGGCAAAGGGTTGCAACTTATCCACCTGCTTCTAATCTCGGCCACCTCTATCGATTCTAATAACACGAGCTCCGCCTTAGACTCGTTAACTAAACTATATTACAACGCTTCTCTTAAAGGTGAGCCTATACAGCGCGTCACTGCATATTTTGCGGATGCCCTAGTTGCTAAGTTATTGACACCAAAATCGTCATTCTACGACGTGATAATTGCTGACCCAATCCCACAAGAGAAATTTTCATCCTTTACTTATCTATATCGCGCTTCTCCTTACTACCAATTTGCTCATTTCACCGCTAACCAAGCTATAATCGAAGCTTTTGAACATGATGAGTTGAAAAATGATAGTAAGTCCTTACACGTCGTTGATTTTGACGTTTCTTATGGGTTTCAATGGCCTTCTTTGATTCAATCTTTATCGGATAAGGCAACAAATAAGTCCAAAATTTCGTTTAAATTAACTGGGTATGGTGAAAATGTTGAAGAGTTGGAGGAGACCGAGGTGAGGTTGTGTAGTTTTGCCAATGGGTGCCCTAACGTGGAGTTTGAGTTTAATGGCGCGCTTCAAGAAAAAGTGCCTTTAAGTAAAATCAAGATTATCAAGAATGAGACTTTAGTCGTGAATGTGGTTTTTCATCAACTTGACCATAGTACATTGAGGGATATACATGCATTGAATCCATCATTATTGGTTTTGGTGGAGAAAGAAGAAAGTATAACTTCTAGAAACTTCCTATCAAGGTTCATGGAATCTTTGCATTACTTTGCCGCCATGTTTGATTCTTTGGATGATTGTTTACCTATGGAAAGTGTTGAGAGGTTGAGCATTGAGAAGAACCATTTGGGAAGGGAGATAAAGAAGCTGGTGGTATCTAATGATCAGGATGTAAACGAAAATAATATAAGTTGTAATAACAAGTTTGGAAAAATGGAGAGTTGGAAAGAGAGAATGAAGAAAAGTAGATTTGAAGGTGTAAATTTAAGTTCTAGGTCGGTAAGTCAAGCAAAATTACTAATAAAAATCAAGAGTCATTGTTCGAATACGAATGAAGGTGGGTTTAGGATTTTGGAAGGTGATGATGGGAAGAGTTTGGGGTTGGGATGGCAAGATCGTAATTTGATCACTGCTTCTGCATGGAAATGTATGATGCCTTGAACATGTATATGCAATTTTTTATGGATATGAGTTATTTCATTATTATTCT

Functional annotation

Database	accession number	e-value	annotation
nr	ONK58065.1	3.3e-143	uncharacterized protein A4U43_C09F7750
Swissprot	A0A0M4FMK2.1	2.6e-44	Protein REQUIRED FOR ARBUSCULAR MYCORRHIZATION 1
trEMBL	A0A5P1E988	2.4e-143	GRAS domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G03450.1	32.59	2e-47	186	RGL2	RGA-like 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G02070	AT3G03450.1	402	226	14	68	450	170	545	32.59	2e-47	186
AfisC6G02070	AT3G54220.1	381	209	13	84	449	298	649	33.60	5e-47	185
AfisC6G02070	AT5G17490.1	399	221	14	68	450	149	516	32.83	6e-46	182

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	76	450	283.0	2.9e-84

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0043231	C	intracellular membrane-bounded organelle
GO:0009628	P	response to abiotic stimulus
GO:0009739	P	response to gibberellin
GO:0009755	P	hormone-mediated signaling pathway
GO:0044763	P	single-organism cellular process
GO:0071229	P	cellular response to acid chemical
GO:0099402	P	plant organ development
GO:1901701	P	cellular response to oxygen-containing compound

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network