result

Gene information

Detail information of AfisC6G02078

Location

Gene	Chr	Start	End	Strand
AfisC6G02078	chr6	342232873	342234207	+

Sequences

CDS

Protein

Gene

>AfisC6G02078
CAAAAGCGAACTCCCACTCCAATATCAAAAAAATTAAATCAAAATCCACAATTTATTCCCTCCCCCACTCAAAATCTTTTCCTCCCTCAAAAGAAAACCCTAGTCCCTTCCATCTCCATTCTTCCCCCCATTTTTTCCCCTTATTTTATTCCCACACAAAACCAAATCCAATCAAATATAAATATAATTTTCAAACTGGGCACCACAACATTGATGGACCAGTCCAATGGAACCACCACCACCACATCCACAAGTCTAGACCTAATCGAAAACCCCAACAAAAACCTAGCACCAGCTGCCCCAACAACGAAGAAACCTTGCAAGGACCGCCACACCAAAGTCGACGGCCGCGGCCGCCGGATCCGGATGCCGGCCGCCTGCGCTGCCCGCGTATTCCAGCTCACCCGTGAGTTGGGCCACAAATCCGACGGCGAAACCATCGAGTGGTTACTCCAGCACGCCGAGCCCGCCATCATCGCCGCCACCGGCACCGGCACTGTCCCCGCCAACTTCTCCACCCTCAACATCTCACTTCGCAGCTGCGGTGGCCGCAGCTCCCTTTACTCCTCCAAATCCGCCCCGCTTTCCTTCCACTCCCCGTTCCCCTATCGGCCGGAGTTCCAGGATCCGGGATTCGGGTTCGATCAGAGTCAGGAAAGCTACCACAATAAGAGGTTCAGAGAGGATTTGTTCAAGGAGGAGGAACCCAATCAAAGTAGTAATACTAATACTTCATCTTCGGTTGAGAATAAGCAGGTGGTACGTGCGGCAGCGAACGTGCTACCAGCAATGTGGGCGGTGGGGCCAGCATCCACAGGAGCAGCAGGGGCCTTCTGGATGCTTCCGGTCTCTGCCGGAAGCAACACTCCCACTGCTGCAGACGGGAATAATCCGGCTATGTGGACGGTGCCTGCGCAGTACAGAAGCACCAGCACGGTGCAGGCGCCGGTGCAGTTCGTGTCGAGGATGGGACTGCCGAGCATGACGTCCATGCTGAGTCAGCAGCCTGGGCCTGGTTCTAAAGCCCATTTGGGTATTGGGCTTAACGACACCAGTTTCAACATGATTACGGCTCTCAATGCCTACAATAATCATCAGACTTTGGATCAGCATCAGAGTCAGAGTCACAGTCATGATAGTGCAGATGATCATCACACTAATTCTCAGTAATTGTGTTATTATTGTTACTGTTGTTATGATTTAAGTTTTAATTTTTTAAATTTGTTCAACTGAGCTGTGCGTGTGTGCTTTAAGAAGCATTTTTATATGTTTTATGGTAACAAAAATCCGTGATGAAGGAGATGTCAGTGTAACTGGGCACAAATATCTTAATCT

Functional annotation

Database	accession number	e-value	annotation
nr	RRT54734.1	5.6e-57	hypothetical protein B296_00048960
Swissprot	Q9C7G4.1	1.8e-44	Transcription factor TCP22
trEMBL	A0A444C4B6	4.1e-57	TCP domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G35560.1	46.44	1e-47	186	AtTCP23;TCP23	TCP family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G02078	AT1G35560.1	267	101	11	33	279	52	296	46.44	1e-47	186
AfisC6G02078	AT1G72010.1	229	76	8	25	214	52	279	49.34	1e-45	180
AfisC6G02078	AT1G58100.1	310	123	11	33	290	57	358	40.97	4e-45	178

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03634.10	TCP	Family	37	180	128.5	2.9e-37

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000987	F	core promoter proximal region sequence-specific DNA binding
GO:0001047	F	core promoter binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009653	P	anatomical structure morphogenesis
GO:0007623	P	circadian rhythm
GO:0008283	P	cell proliferation
GO:0008361	P	regulation of cell size
GO:0009735	P	response to cytokinin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0010029	P	regulation of seed germination
GO:0010229	P	inflorescence development
GO:0010252	P	auxin homeostasis
GO:0031347	P	regulation of defense response
GO:0031540	P	regulation of anthocyanin biosynthetic process
GO:0042023	P	DNA endoreduplication
GO:0048364	P	root development
GO:0048467	P	gynoecium development
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:1900056	P	negative regulation of leaf senescence

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16221	TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION)	EC:-	Circadian rhythm - plant	ko04712

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network