result

Gene information

Detail information of AfisC6G02724

Location

Gene	Chr	Start	End	Strand
AfisC6G02724	chr6	475906566	475909410	+

Sequences

CDS

>AfisC6G02724
ATGGACAACAAAATAGCCACGTACTTTGGTCTAGGGTATAGTGAAGAAGGAGGTTCATCATCATCTAGCCTTTCTCATCTCATGAACATTATGCCTCCTCCTCCATCTACCCACTTCAACTTATTCAATCTTAACAATCAACAATATTCCAAAAATGACCATCAAGATTTTGAAATCAGCAGCAGCAGCAGCAGCAATAACTTGATCAAGGCAAAAATCATGTCTCATCCTCATTACCCGAAACTCCTTTCTGCCTACGTTAACTGCCAAAAGGTTGGAGCACCTCCTGAAGTTGTTGCTAGGTTAGAGGAGGCTTGTTCATCTTCACTAATGATTGCAAGGGCTGCTAATTCTTCCTCTTCTTCGACTTTGAATTCAGATCCAGCACTTGACCAGTTCATGGAGGCTTACTGTGAAATGCTCATTAAATATGAGCAAGAGCTCTCAAAACCAGTTAAAGAAGCCATGATTTTTCTTTCTACCATTGAAGCTCAATTCAAATCTTTAGCACTTTCTACTACTTCACTTAACCAAGTGAGTACTGGTGAAACAGAAAGAAGAATGAATGGTACGACATCAGAAGACGACATGGAATGCGAATATCCAATAGACCCCTTGGCTGAAGACAGGGAACTCAAAGGTCAACTGCTGCGCAGATACAGCGGTTACCTAGGCAACCTCAAACAAGAATTCATGAAAAAGAAGAAGAAAGGGAAGCTGCCTAAAGAAGCAAGACAGCAACTTCTTGACTGGTGGACTCAGCATTACAAGTGGCCTTACCCTTCTGAGTCTCAAAAGGTGGCGCTAGCGGAATCAACTGGGCTTGACCAGAAGCAGATAAACAACTGGTTCATTAACCAGAGGAAGAGACACTGGAAGCCCACTGATGAACTTCAAACTTATGTGGTCATGGGAGATGCATCGCATCCGCACTATTTCTTGGAGAATAATATTGGGTTTGCTAATCCTTACCCTTTTGATATTGCTCCTACTACCCTTATCTGA

Protein

Gene

>AfisC6G02724
GCTTGAAGAATGGACAACAAAATAGCCACGTACTTTGGTCTAGGGTATAGTGAAGAAGGAGGTTCATCATCATCTAGCCTTTCTCATCTCATGAACATTATGCCTCCTCCTCCATCTACCCACTTCAACTTATTCAATCTTAACAATCAACAATATTCCAAAAATGACCATCAAGATTTTGAAATCAGCAGCAGCAGCAGCAGCAATAACTTGATCAAGGCAAAAATCATGTCTCATCCTCATTACCCGAAACTCCTTTCTGCCTACGTTAACTGCCAAAAGGTGTCACTTTTTGCTACCATGGTATATTGCTCTACGTGTTGTTTTACAAACCCTAACGCTAGCACGATTTGTTTGATTCTATTTTGTGAAGGTTGGAGCACCTCCTGAAGTTGTTGCTAGGTTAGAGGAGGCTTGTTCATCTTCACTAATGATTGCAAGGGCTGCTAATTCTTCCTCTTCTTCGACTTTGAATTCAGATCCAGCACTTGACCAGTTCATGGAGGCTTACTGTGAAATGCTCATTAAATATGAGCAAGAGCTCTCAAAACCAGTTAAAGAAGCCATGATTTTTCTTTCTACCATTGAAGCTCAATTCAAATCTTTAGCACTTTCTACTACTTCACTTAACCAAGGTTTTTGAATTATTATTTTTTTTCTTCTCAATAATTCATTATTTTTGTTTGGTTTTGGAAAGTGTAGATATTTAGGTTGTTAAATATGTTTGATGGAGACTAATTAAGTATTGTTTTATGAATCTTTACTAATTAAATAATGATCATCCAATAGCTAATAACTAAGCTACGGTTAAATACTTTTTATTACTAGCCTATATATGTAGTAAATTCCAAAGCTATATATTAGGGATACAGATTAGATTGTTTAACTTAATTTGAAAGAATACTTTATTTTCTGTCCTTGTGTTTTAGTTAATTTCGAAAGAATAAAAGAAGAAATACTACTTGGAACGAAGACCTTACTTAATTATGGTGAAAATTTCGATGAATTTATGGCTAACAATTCATTGACTATTTTCGGTTTTCCTCTTTTATATTCCAATTCTAGATATTGTTAGATTTTGAGAAAGAGTTGAATGAAAAACTTGGATAAAATGTTATCGTTTCCTGGGTTGATCTTTACCTTATACTAATATAAAATTTGCATTTAATCACAAGCTTACATCACTAATATTTGTACTATTTTGTAAAAAAATTATTGTTAAAACTTAAACTTGTTCTGTTCGTAGTCTTCTTTCTCCATATATTTTAGGCAAATTATATATGTCAATGGTTTTTTAATTGATAATAAAATTTGATATGAACTAAATTTTAAAAGATATTTGTTGACTGGAGCTCAAACTTTAGCTTTTGAAATCAAAGCTTTTATCTCACTGATTCATGCTTATTGAATATCTTTTTCAATTGAACGTAACTATTGATTGATAGCGGTTTTGACTAAAAGTTCGTTGTTTTCAGACACAAGTTAGGATTTGTTACTATTGTTTGTTTTGTTGTGTTTTTGATTTTTCTCAATCTGTATTTTTCATTGTTTACATTTAAACTGTATCATCTACATTTTAATTGCGTTGGTGCATTTCAATTGCACTGTGAAATGAAATAGATTAATTTGTATACACAAACATATGACTGTACACGTGATATATGTGACATTCATACAATATAATTTACAATACATAAAATGTTTGACTAAGTAATTGTTTTGTTTTTCCATACCTAACATCTATGATTCAGGTATTCTAGAACAGTTAAGGGCAAACGTAATCGGAATATGATGAAATTTACGGTCTGATTCAGATTCATAGACATTAAAACAAAATCTAGTCTTGCATGATAAAGCTACTAGGTACCCTAAATTGTATCTGTTCTCACTTGTATATAAACTGGCATCCCGATTGACAAACTTGTTTTTCATGTTTTCTAACTATAGCCAGGTTGTTGAAAGATTGTGGAGCTTCGTTAACTCAAACTTGCTTACATCATTTAATCTTACAGTCTGAATTTGTTAGCAAGCCATACTATATATATAGTTGACAAACATCCTATAATCATATATTATGTTTACTAGCATATAACAAAGGGTATATATTTACCATGTTTTAATCATAGAAACATTGGTGAATTATTTGTGCAGTAGTGAGTACTGGTGAAACAGAAAGAAGAATGAATGGTACGACATCAGAAGACGACATGGAATGCGAATATCCAATAGACCCCTTGGCTGAAGACAGGGAACTCAAAGGTCAACTGCTGCGCAGATACAGCGGTTACCTAGGCAACCTCAAACAAGAATTCATGAAAAAGAAGAAGAAAGGGAAGCTGCCTAAAGAAGCAAGACAGCAACTTCTTGACTGGTGGACTCAGCATTACAAGTGGCCTTACCCTTCTGTAATTTCCTTTTCTCATCTTCATCACTTTTAAATACACTCATATGTTAAATTAATATGCGCTTGAAAATAATTGACATATCGAAGGAGTCTCAAAAGGTGGCGCTAGCGGAATCAACTGGGCTTGACCAGAAGCAGATAAACAACTGGTTCATTAACCAGAGGAAGAGACACTGGAAGCCCACTGATGAACTTCAAACTTATGTGGTCATGGGAGATGCATCGCATCCGCACTATTTCTTGGAGAATAATATTGGGTTTGCTAATCCTTACCCTTTTGATATTGCTCCTACTACCCTTATCTGACTTTTTTTATTAGTTAATTGTTGTTTTTGATTGTTCTTTATCGTTGTTTACTACTGTGATGTTGTGATGCATGTTGAAAACCTTGAAACTTGGTTATTGCCACTAGTGGTTTAAGTACATTTACCCTGTTGTGAA

Functional annotation

Database	accession number	e-value	annotation
nr	ONK70249.1	2.3e-109	uncharacterized protein A4U43_C05F31790
Swissprot	P46608.1	5.7e-97	Homeobox protein SBH1
trEMBL	A0A5P1F0B6	1.6e-109	Ubiquitin-like domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G62360.1	68.52	8e-91	330	BUM;BUM1;SHL;STM;WAM;WAM1	KNOX/ELK homeobox transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G02724	AT1G62360.1	270	73	9	69	334	121	382	68.52	8e-91	330
AfisC6G02724	AT4G08150.1	251	94	6	69	312	134	379	57.77	4e-71	265
AfisC6G02724	AT1G23380.1	254	112	4	65	312	81	324	49.61	8e-63	237

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03790.10	KNOX1	Family	69	107	83.6	5.3e-24
PF03791.10	KNOX2	Family	125	169	70.8	5.1e-20
PF03789.10	ELK	Domain	211	232	40.3	2.1e-10
PF05920.8	Homeobox_KN	Family	251	290	62.1	3e-17

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001708	P	cell fate specification
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009536	C	plastid
GO:0010051	P	xylem and phloem pattern formation
GO:0010073	P	meristem maintenance
GO:0010089	P	xylem development
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network