result

Gene information

Detail information of AfisC6G03005

Location

Gene	Chr	Start	End	Strand
AfisC6G03005	chr6	528196618	528198557	-

Sequences

CDS

Protein

Gene

>AfisC6G03005
ATGGGAACATTCGGGTAGATTTTCTATCATAATATAACTCTAAAGATTGATTTGATATTGATACAAAATTATGAATATCAGATATCTGGCACCAGAATATGCATCTAGTGGAAAGTTAACCGACAAATCCGATGTGTTCTCATTCGGAGTAGTTCTTCTTGAAATTATAACAGGGCGCAAGCCTGTAGATTCAACCCAAGCATATGGGGATGAATGCTTAGTTGAATGGGTAAGCATTGATTTCTATTTTTCAACTTATATCTGTGTGCATAATACTGAAAATATTTCAAACATATATTTCTCAAAATAATTAAAACTGAAAGATAGCGGCATTGATATGTTAATAAGGTACCTGAATTGCTTGGAAGTTTCTAAATAAGCGAAAATTTATGTAGGCTCGTCCCCTACTAGTCCAAGCTCTTGAAACAGGAAACTGTGATGGGTTAGTAGACCCAAGGCTGGAAGGAAATTATAATAAGTTCGAAATGTTTAATATGATTGAAGCGGCAGCTGCATGTGTTCGTCATTCTGCTCCCAAACGACCTCGCATGGTTCAGGTATTTAATCTTTTCAAAGTCATAAACAAAAGTACTCTGTTATAACTTATGACATATAGAGTTACAACTATTAAAGCACAAAGAATATTGGATGAGGGCCATGATTGAAAAATTGAGAAACAGAAACTTAAATGAGTGAAAATTTTCAAAATATGTATCCACATATGGTGCCCTTATATTTTGAACAACAAAAATGTCTATGCACTTTTTTAGTCTTTTGTCAGGAATCTAAAAATTTCAGAATTTCCAAGATTAGTTCTTTCTTTGTATTAAAAAAAATGCATTGTTCAGTGTTTGGAATTATATAAATCAATGAACTCCTAGTTTCAAATTTCTAACAAATTCAAACTGTTTTGGATTGTTTTTTCAAATTTGAAGATTTTAAAAATTCACACTTTCACATCAAAAACTTGCAAGTTTTCTAAATTCAAATTTTCTTCCAAAATTAGAATATTTCAAAACTTATATCTTAGAACTAGAAAATTTTCAAAGGTTGTTATTTGGAAATTCAAATTCTATGAAGTAAAAATTTGAAAGTCAAAATATTAAAAATTGGAAAAAAAAACTTTCAAATAATGCAAAATAAGATTTTCAAACATAAGGGAACAACCAACAATGCCTTATTCAGTTGAAAAACTAGCCACGAAGCAATCAGATTTGACTTGTTCACTAACCCGTAGCTGGTTCAAACCAATTTCGTGACTAGTTCACTGAATGGCTAGTTTGTATAACAGCGAAGCTTTCGCCGTTATAGGTTGTAGCCGTTGAGCTTTAAGGCATAAGTTTATAACGACGAAAGTTTCGCCGTTATATATAAATCCTACCAATTATTTAACTTCACTGGCCCATGGTTAGTTTTACGGTTACCTGAACGCACGGCTCGTTCGTTCAGTTGCAAAGCAGGAGAGAGGGTGAAGTGAATAGGTTGGATCGTTGGTAATGGTCTAACAATACACATCTTTATAATTTATTATATGCCAAGCCAAAAGTAGAATTAATAGAGGTATAAGTAGTGTTACTAAAGCACACGAAATTAATTTGTATAAAAATGTATATACCTTTAATGTTGAGAGATCCAAGTAATTTAACTTGTTTGAATAGGTGGTAAGGGTATTGGACAGCCAAGATGACATGGGGTCGGACTTGAGCAACGGTGTAAAGTACGGCCAAAGTCAAGCATTCACCCCAAGTGAACAAGGAGCAATGGACATGCAAAGGTTTCGCCGAATGGCCTTTGGAAACGATACAGACAGCTACGGCTACGATTCAGGAGACTATGATCGCAGAAGCACAGCATACAGTGGAGAATACAGAAGAGACCACAAAGGCCCTCCTCCACCACCTGGCATGTATCATTATAGCGGTGGCAGAAACCACCTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020251598.1	1.8e-69	proline-rich receptor-like protein kinase PERK12
Swissprot	Q9ZUE0.2	1.1e-55	Protein INFLORESCENCE GROWTH INHIBITOR 1
trEMBL	A0A5P1FUH3	1.3e-69	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G23540.1	64.04	2e-58	221	AtPERK12;IGI1;PERK12	Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G03005	AT1G23540.1	178	60	4	1	176	532	707	64.04	2e-58	221
AfisC6G03005	AT1G70460.1	187	60	4	1	181	514	698	63.64	1e-57	219
AfisC6G03005	AT1G10620.1	184	71	3	1	184	531	710	59.24	3e-56	214

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	6	44	33.9	1.8e-08

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0005524	F	ATP binding
GO:0006950	P	response to stress
GO:0007166	P	cell surface receptor signaling pathway
GO:0019722	P	calcium-mediated signaling
GO:0009506	C	plasmodesma
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009845	P	seed germination
GO:0010068	P	protoderm histogenesis
GO:0019901	F	protein kinase binding
GO:0042335	P	cuticle development
GO:0046777	P	protein autophosphorylation
GO:0048364	P	root development
GO:0048367	P	shoot system development
GO:1900459	P	positive regulation of brassinosteroid mediated signaling pathway
GO:1905393

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network