Gene information

Detail information of AfisC6G03199

Location

Gene	Chr	Start	End	Strand
AfisC6G03199	chr6	577439325	577440019	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020251321.1	3.8e-70	ethylene-responsive transcription factor WIN1
Swissprot	Q9XI33.1	9.7e-55	Protein WAX INDUCER 1
trEMBL	A0A8B7CR44	2.0e-65	ethylene-responsive transcription factor WIN1-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G15360.1	58.22	7e-59	223	AtSHN1;SHN1;WIN1	Integrase-type DNA-binding superfamily protein

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G03199	AT1G15360.1	213	57	4	1	195	1	199	58.22	7e-59	223
AfisC6G03199	AT5G25390.2	197	76	2	1	197	1	181	53.30	8e-53	203
AfisC6G03199	AT5G25390.1	197	76	3	1	197	1	178	51.78	2e-49	191

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	6	53	46.6	2.7e-12

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0016020	C	membrane
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009611	P	response to wounding
GO:0009733	P	response to auxin
GO:0009736	P	cytokinin-activated signaling pathway
GO:0010017	P	red or far-red light signaling pathway
GO:0010104	P	regulation of ethylene-activated signaling pathway
GO:0010143	P	cutin biosynthetic process
GO:0010166	P	wax metabolic process
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0034059	P	response to anoxia
GO:0042991	P	transcription factor import into nucleus
GO:0043565	F	sequence-specific DNA binding
GO:0045595	P	regulation of cell differentiation
GO:0048825	P	cotyledon development
GO:0071472	P	cellular response to salt stress

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network