result

Gene information

Detail information of AfisC6G03568

Location

Gene	Chr	Start	End	Strand
AfisC6G03568	chr6	648212493	648218155	-

Sequences

CDS

Protein

Gene

>AfisC6G03568
ATGCGTCAGCAGAGCGTAAACTATGTTCCTAGACAAGGACTGTCATAGACGGGCATAGTGGGTGTCATTAGTGATGAAGCTCTAGAATATACAGGTCAATGTTTTCTTTGTTTCTTCCCAAATCAATCACCGAGAGACTACTTGCTAATTAACAAAAGACAGTTTTCCTCCCAAAAACATCGCTAAAACCGTGTTTTATCACTGTAGTTTATGTACGTAAACATGTTAAATGTAAACAGAAACTCTAGATGACATCTCTCTATATGTACACCATTCGCTGAGTTTTCTTGTCTCCATTTAATCCATCGACTTGTTTCGATTACACATATTATTTTATTTTATATAAATGAACGTATATAATATGTATTTTTTAAATACTGGACAAATCTCATTTCGTCTGTCAGTGAGCATAGCTAGGAAGACATCATTTCATTAGAAATGAATATAAAAATGACAAAGCTAAAGAAGTAGTGAAGAGGAAAAAAAGAAGAGAAGGGTGAAAAGAAAGAAGTGTGAAAGAACCAACGTGGTTGATTTGGAGTCCGTGAGGTTTAGACTTGTATTTAACACATCCACGACAAGGCAACGTGTATCACCTACACACCGCACACTCATCTAGTCTTCACTTTTAATGTTCCCACCTGTATATTATCAGCCTCCTTTTTTCATTTTTGTTTAATCATCTCCCCGTGTATTCGTATATATATCTACAGTATATATAGATATATAAACATATCATATTATAGCCAAAGCTAATTTGCACTAGCGAAAAGCCATAACAAAATGGGAAGAGCTCCATGTTGTGAAAAAGTGGGATTGAAGAGAGGAAGATGGACGGCTGAAGAAGATGACAAACTGGCAAGGTACATTACTGAAAATGGCGAAGGGTGCTGGAGATCTTTGCCTAAGAATGCAGGTATTTTTTTCCTAGTTTATTTTCTTTACTTTTACAAGAATATTAATGTGCGTTATTGTTCTTTTTTGGATCTATTTTTATACTACTATCACTCATTTATAAAAAAAATCATGTGTATCAGCAAATCGTGGAGATTTGTGTAGTGTTTATGTCGACTTTTTTACTCGTCCTATTGTTCTCGTTACTATTCGGATGCTTGATAAATGTATCTACTGATTCTTTTGAGTTCATAACAAAATATTTTTGAAGCATTGAAGATTTTACATAGCGCAGAAGCTAATATGAATTGTTAGGAATATGTCACACTTGTTCTGCTTGTAGTTGGACAAATAAATTAAGTATACTTGTTGTGCTTCTATTTGAGTGCTATGTTGTTTTCAGCAGTACTGGATCATTTAAAAGTTTTAACAGTTGATATTTTTATCACTGCCGTGAATTCTTCAAAGAGTGATGCTAAAAGGTTCAAAAGTGGAAAACCCCGGATAGAAACAATATATTTGACTCAGTTCACGAAGAATTTTAAGGTTTCTTTCTACTTCGAGTAATTTACCTTTAGCTGACGTCGGCTCAGACCTTTCAGCGTTTTCGAATTCGAACAATGTTCACACTATTCAAATTTAGAGTGTGTTCCTAGTATTGTGCTTTCATCTTTCCTTTTTTTTCTTTTTTCTTTTTTTTTTCTTTTTTCTTTTTTTTTTTCACACGTCCACCTCTTCTTTACTCCTTTTCCTATCAAGAGATATTTTGAAATATGCATATTATTAGATACCAATGTTTCATATTCACTTTATTTGCCTTTAATAAACATAAATAATTAATTTAAATAGCAATGATAATTTTGTATTAAAACATCATGTTTTTTTATGTGGAAAATAGGCACAAGGACAAATTTTCATAAAATTTTTGGCTGAAGGACAACAAGTTTTATTTTTAGGCTGAAGGACAAACTTTGGAAGATAATTAGGTTGAAGGACAATGCTAATACAACTAGCATTTTGTACAATGTAAAACTGGATATAATGTTAGTTATAATTAGCATTTTGTACAATGTTTGCACTGCACAAAATGCAATTATATTTAGGATTTTCCTTCAGCCTAATTTTCTTTCAAAGTTTGTCATTCAGCTTAAAAATGAAACTTTGTGTCCTTCAGCCTAAATTTTTTTCAAAGTTTTTCCTTATGCCTAATTCTCTTCTTTTTTTTATCTTATATTTCAATAATAAATGGATCTGAAGTACATACATCGGAATTTTGTTACCCTTACCAAAACATAGTAAGTAAATTTTAATTTAAAGAAAGGATATGTATGAGTCATGACATGTGCTATTGCTTCCCATATAATTTTACCAGTTTTAATTAAAATTTACTTTAATATATGTTTATGTAAAAGTAACATAAGTATAGGTAACAAACTCTAACCCATGTCTGGTTTAACTATGTAAGTTCAAGTTTATATATGGTATAGAGAATTGGTAGGTTGGCTTAGCTTTGATATGCAGCCCCGGGGCCAATTATTATTAAACATAAACCTGGTGTTTAACCTGATAATAACAAAATACCAAAAAAAAATCATCTAAATTGATTGTCACTACGAAAGAAAAGGTTCAAAGCTAGCAAAGATGGTGATGCGTGAACAACGTCTTGTTTATAACGGTCGGATCGTGGGGTCACAAGGGCCGTGTTTCATAACGAAATGCATGACAGTGCTCCATCCAAAAAACTATATTATTTTTTTTATTTTTGAATTTAAATTCAAACAATAAACAGTTATAACAATGTGTACCAAAGATTCCAACAGCAGGTTCCAACAATAAACAGTTATAACAATGTGTAACAGTTATAACAATGTGTTTGTTCCAATAGCCGCCACCTAACGGAAGCATCCTCTTTATACTATGTATACATACATAACAATACTTTGTCACATAAGCATAACTTCGTTTTCTACTTTTTTGAATTCAAACTAATAAAAGCATCATCCGATCACTGCTGTTTTATTGATTGGGAAAAACATTTTTTTTCAAAAAAGCGTGTATAAGACGACAGCAATGCTATTGTGACCGAAAAAAAATTTGCCAAAAATTGAAGCAGCAAATCTAACCTTACAATTATAACCCCCTCCTAATATCCAACGTATATTCCCTTCCATTTCTCCCCCGTACGTGCATCCCGTATCCACGTTTTTTAGTCAGTCTAGCATTTCTCATAAGACGATGAGCAAACAGTTGTTATATTGATGATATGTCAAGTCATCTTGACTGTTTGATACATTTAATATTAATTATATTCGAAATACTACTAATATACAGTAAACAAAAACATATGATTTAGTCTGTTCCATTTGTCGTTATAACTTTATGATATGCCAATTTTAATGCACGACGACACGTATCATATATTTAACTGAAAAAAAAGATGGCAATAACAAATTTAGATGCTTGTTGATCATTTTTAATAAGTGTGTATTATACAGTTAGAGTCTTGTACTTGTTAATGTACGGAAAATATTTTTTTTTCTAGTTGAATTCTCCTTTAAATTAGTTGATGCTTGGTACTTGATTATTCTTGGAACCTGCTGTTGCAGTAAGCAAGTTACATGGTTATTCAGCTTGAGTACCTTTCAAACGGATGTACTTTAATATTGTATTTTATTTCCTCGAAGGATTACTGCGCTGTGGAAAAAGTTGCAGATTAAGGTGGATTAATTACTTAAGAGGTGACTTAAAGAGAGGTAATATTACTGCGGAAGAGGAGGAGAAGATTGTGAAATTACATGCAACTCTTGGAAACAGGTAATCTATTATTCACCGTTGAAATTCGTAGAATTATACATAGAATTATACATAGAGTAATATTTAAAGAGATCTCGATCAATAATCAATATTACATGTTTTCTTTTTGGGAAAAAGAATGAAAGAATGGACGGCTAAGAGTTGTAAAGAGATGAGATGAATTAAAATAGCACATATTCTAGACCATACAATTCAGTTCATTATGGAAAGTCTGTAACTTTTTTTTTCAGCATTGTTTCAGTGTGTTTTATTTCTATGTTTTTACGATGATTAAGATTTTAAGAGGACAATCGATGGTAGTGTTAGAGAATTACTACCATGTAACTTAATAGCACAACAGGAAGGAAAAAAAAGGAAAATAAATAATAATCAGACATTATATAATTTAACAACAGCATGTATCTTTAGGACACTTATCAACAATATAGAAAATGTTTACATGTAATTAAAGATTGTAATGATACAAAGATTTATCCGTATATCTAATAATGTATATGTTTATGTTTTAAACTTTTTTTATGATATTTTTGGATTTCATCCTATTCATTTATTTCCTATATGTATATGAAACAAACTAAAAAGGAACAATACAAAATTCCATAAATGTCGGAGGTGATTAGTTGACCTATATGGTCCCATATGATTGATTGATGGAGACGTCACAACTTGTGAGGGATTTACGAAACCAGGAAGGTGTCGGCGTTAAATAACTTTTCCATTTTCATTTATTTACTATTTATTACATATGCGTCATATGTGTACTATTCCTGTACGTAGAAGATACAAGATGATACTACACTAAAATGATGTACAAAACCGTATAATAATATATGGTTGAGTATCCTATTTTCAGTGGTAAATATCACATGTAACAGCTAAAAAGCTTAATTAAATTAACTAATTCCTAAGAAGCCGGCATTAAAGCAGCATGCACTGAGGATCTTATATATATATTTCACGTGATCGTGCAGGTGGTCATTGATAGCAGGTCATCTTCCAGGCAGAACAGACAACGAAATAAAGAATTACTGGAACTCTCATCTGAGCAGAAGAGTACACAGTTATCGTAAAATCGGAAGTGAAAACGAGATAGTAACAATGGTTCTAGACAAAGTTCCAGGTGGCAGCAAAAGAAGAGGAGGTCGTACAAGTCGATCTGCTATGAAAAAGAACAGCTTAGTTCTGGATACAGCGAAAAAAGAAAAGGAGAAGGTAGAGAACTGTAAAGGCATGGTAGATTGCCTATCTCCATCTTCAATGGTGCAAAGCAGTGAAGAAGGAAGTAATATAACAAATATAGAGTACACAAAATGTACATTCGGTGAACTGGACCAAGACTTGCTGGTCCAAAATGGTGACATTTGGGACCCGAATGATTTGCTTGGAACAAGTGAGGCCTTGAGCACAAATGATCTAGAAAGATGGGAGAATGGGGCCCATATCATAAATGGGTGTGGGCAGATGGGTGGCCCAATAGATGGAATAGGCCAAGTTGACAATTGGGACATGATGGACAAATTATGGGAGATTAGGAATGAAGGAGAAATGCACACATGGCCGTGGGATTTTGCAGATGATAATGTTAAGCAGTTGCATGGCCAGGAAATTGAGTCTTTGACCAGTTGGCTTTACCAAGACGGCTTGTAGAGCAAATTTTTAAAAGAGAGAAAAAAGTTTGTTAGATAATTTGGTGTTTGATTGTGAGGGCCGTATTGCAACAAAAAGGAGAAAACAAACTAGGAAAAATCATCATAATTTTTTTTGAGAAACAAGTGTGAATGTGTGTTTCATTGTACATGTGACGCAAGCTTATGTATTAATGTGGAATGTAAGGTAGTGTAATGAATGTGCTATGTTTTTATGTAGAATATGTGAATGTGTGTCGCGGTTTGAGTGGAACCATTTATACAGTATTTCTTGCCCAACGGGATATAAATCATTTGTTCGTCTGTTCA

Functional annotation

Database	accession number	e-value	annotation
nr	AQP25675.1	1.8e-100	MYB transcription factor
Swissprot	P27898.1	2.2e-63	Myb-related protein P
trEMBL	A0A1S5VIF0	1.3e-100	MYB transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G47460.1	73.58	3e-63	238	ATMYB12;MYB12;PFG1	myb domain protein 12

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G03568	AT2G47460.1	159	36	1	1	153	1	159	73.58	3e-63	238
AfisC6G03568	AT5G49330.1	176	52	2	1	163	1	176	63.07	1e-58	223
AfisC6G03568	AT3G62610.1	189	68	2	1	189	1	183	60.85	3e-56	215

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	61	54.6	8.2e-15
PF00249.28	Myb_DNA-binding	Domain	67	112	58.1	6.4e-16

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0010091	P	trichome branching
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0043565	F	sequence-specific DNA binding
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1903086	P	negative regulation of sinapate ester biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network