result

Gene information

Detail information of AfisC6G04814

Location

Gene	Chr	Start	End	Strand
AfisC6G04814	chr6	863126338	863128317	+

Sequences

CDS

Protein

Gene

>AfisC6G04814
ATATATCATGAGTGAAACTAGAGACCCTTGTCTTTAGCCTCTCTTGCTTAACAAATTTTCAAATATGATACTTTTTTTTAATAATTAATTATAGTGGATTATCTTTAAGTGTTTTAGTGATCACTGCTAGCTAGAAGTAGAGGAAGAATTAATAGCAATAGTTTGGATATGGGAAGACCACCTTGTTGCGATAAAGTGGGAGTGAAGAAAGGGCCATGGACTCCTGAAGAAGATATTATTTTAGTTTCTTATATTCAAGAAAATGGTCCTGGTAACTGGAGAGCTGTTCCTACTAATACTGGTTAGTATTTTTAGTAGTGATATGGAACTTTTATATTTGGTGTTTAAGGAACAAAATGTTGGGGTGATACCATTGTTAAATTTATATTTAGCTTCTGATCAAAGCATGTTAAATGTTTATTATTTAGTTTTTGAGTGGATCTAACATATTGATGACAAATGGTTTGGAATCAAAATGTGACATAGGGTAGTATTAACTTATTTTAAGCTATTTTTTCCTCTAAACTTTTGAGTTTAAACCTTTTTCTTGAGGATTATAAAATGGAGTTGAATTAAAGTTCAAAATCAATAAAACATGAAGATGTTATAAGGAACATAATTGTCTTTGTTTGTTTACAATACATGTTAAGGTCTCAAATTACTTTGAGCAATTTGAATTGATTAAGAATTAAATTGAAAGGTTAATTTGGGGTGATTGTTGCTAATTTCTATGATCAATAACACTAAATCGATCAGTTCAAGCTTTTCTTTGAGTTGGAAATTTCATTTCTAAAATAAATTTCATAAAGAATCCAATCATAGGGAAAAACTTCTCTAGTTCAATGTAAAGATTGCATAATTTTCAGTTCTTTAATGTGTTTTCACTAAATCTCCATCCATAGGCCTGATGAGATGCAGCAAAAGTTGTCGACTAAGATGGACAAATTATCTCAGGCCAGGGATCAAACGCGGTAGTTTCACTGAACAAGAAGAAAAACTCATTATCCATCTTCAAGCCCTACTTGGCAACAGGTAAAAATTAGTTCACCAAAACTTTCTCTCTCTCACTCTAAAATGGCAAGATATTGTACTATTGCTCTATTACACACGCGTGCATCTAAAATGGCAAGATATTGTACTATAGTTGTTATATTATACACAGATGGGCTGCAATTGCTTCTTACCTCCCTGAAAGAACAGACAACGATATCAAGAACTACTGGAACACACACCTAAAGAAAAAACTCAAAAACGTCGATCTAAACAATGGAAATTCAAACAGCAACCAACCAAATGCAAAAGGTCAATGGGAAAGAAGGCTCCAAACCGATATTCATTTGGCAAAGCAAGCTTTATGTGATGCATTATCTACAGAAAAGCCTGAAATTTTAACTAATACAAAACCATCTCCTAACTTATTCTCTGCATCATCCTCTTCTGCTTCCATGATCAGTGCAGCTTATGCTTCAAGCACTGAAAATATTTCAAAATTGCTTGAAAATTGGATGAAGAAATCGAATAGTGCAAATTCTGTATCGACTCAGCATTCGGTTACAACTCCTGATGTGTCTGGAGAGAGCAAAGAGATTGAAAAAGATAAAATACCTCTAGAATTGCTTGAAACTTGGTTGTTTGATGAGAATATTGGACATGGAAATGATGACTTGGACTTACAGTTAGATTTTTAATGGCAGAAACTCCTAGATCTGTTTCACAGCTGTAAATTAAAAAAAAAAAACAAAAGAAAAAAAAGAACAAAAAAATATATGATATCTTTGTTTTGATAGTATTTTCATTTTAGAAGCTATTTTGATAAGTAGTAATAATTACAACTTTAATTTATCTGAGGTATTTGTTTTCTGAGAATGTACATGTATTTACATAGGGTTAGCATCTTTAAGGCTTTAACTTGAATTTGGTATATATTCTTGGATTGTGCTCAAGTAACCTGAAATGGTTGCTTATTGTTATTAATGGAAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020255555.1	7.1e-90	LOW QUALITY PROTEIN: myb-related protein 306-like
Swissprot	P81392.1	4.8e-83	Myb-related protein 306
trEMBL	K9LW94	7.9e-99	R2R3 MYB

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G47600.1	59.15	2e-83	305	ATMYB94;ATMYBCP70;MYB94	myb domain protein 94

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G04814	AT3G47600.1	284	78	6	1	247	1	283	59.15	2e-83	305
AfisC6G04814	AT5G62470.2	274	71	5	1	229	1	274	57.66	8e-80	293
AfisC6G04814	AT3G28910.1	242	58	4	1	214	1	242	64.46	3e-79	291

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	14	61	55.6	3.8e-15
PF00249.28	Myb_DNA-binding	Domain	67	112	57.5	9.9e-16

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0016049	P	cell growth
GO:0001666	P	response to hypoxia
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009414	P	response to water deprivation
GO:0009416	P	response to light stimulus
GO:0009611	P	response to wounding
GO:0009617	P	response to bacterium
GO:0009626	P	plant-type hypersensitive response
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009909	P	regulation of flower development
GO:0010091	P	trichome branching
GO:0010118	P	stomatal movement
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0042335	P	cuticle development
GO:0042761	P	very long-chain fatty acid biosynthetic process
GO:0043565	F	sequence-specific DNA binding
GO:0080091	P	regulation of raffinose metabolic process
GO:0080167	P	response to karrikin
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network