result

Gene information

Detail information of AfisC6G05683

Location

Gene	Chr	Start	End	Strand
AfisC6G05683	chr6	999103465	999105335	-

Sequences

CDS

>AfisC6G05683
ATGAAGCTAATTACAAGTCCAACAATCCCAAAACCTTCGATTCTATGTTTCGGATGCATCACTAATCAAAAACCCTCCATCAAAATTTTAACTTTGGGCTTCAATCACCATGAATTCGATCTCGCTGCGAAATTTACCAGAGCTGCTTACGCTACTTCTTCTTCAACTACCCCAATTCATGGAAGAAGAACCCAAAACCCTTATTCCTCACCTTCATTATACTCCAGACCAAGCTTGCACGAAATGAAAAAAGACAAAGCGGCGAATCGGGTAAAAGTTTATGAATTCTTACGAAGTCTTGGTATTGTCCCTGACGAGCTAGATGGACTCGAGCTACCAGTCACAATTGATGTAATGAAAGAGAGAATTGATTGTTTGCATTCATTAGGTCTTACCATAGATGATATCAACAATTACCCGTTGGTTTTAGGTTGTAGTGTGAAGAAAAACATTATCCCAGTTCTGGATTATTTGGCTAGTTTAGGTATCCGTAAATCAATGGTCACTGACTTCTTAAGAAGGTACCCTCAAGTCCTACATTCAAGTGTGGTGGTTGATTTAAAGCCAGTCGTGAGCTATTTACAAGGCATGGATATAAGACCTGTAGATATTCCTTTGGTTTTGGAAAGGTATCCAGAAATTCTAGGATTCAAGTTAGAAGGGACAATGAGCACTTCAGTTGCATATTTGATTGGAATAGGAGTTGGCAGACGAGAACTCGGTAGGGTTCTTACTAAATACCCAGAGATTCTGGGTATGCGAGTTGCACGTGTTATAAAGCCTTATGTTGAATATCTAGAGTCAATAGGGTTGCCCAGGCTCGCTGTAGCTAGACTTATAGAAAAGAGTCCGCATATTCTTGGGTTTAGGCTTGAAGATTTAGTTAAGCCTAATGTTGAATGTCTCTTGGAATATTGTGTTAGGAGAGAGTCCTTGAGTTCAGTTATAGCACAGTACCCTGAAATGTTAGGACTTGAACTGAAAACGAAGCTCGAGACACAGCTATGTTTGCTTGAATCTAATATGTTGATAACGGGGCGCGAGGAACTTGGAAGGATGATTGAAAGAATGCCTCAAACAGTGAGCCTTGGTCGTGCTAATGTACTTAAGCATGTTGAGTTTTTGAAAAGGTGTGGATTTTCTTTGAAGCAAGTTAGCAAGATGTGTGTTGCATGTCCACAGATACTAGCTTTGAATGTCGATGTAATGAAGTCGAGCTTTGAGTATTTTAAGATGGAAATGGATAGGGATCTAGAGGATTTGGTTGAGTTTCCTGCTTACTTTACTTATAGCCTTGAGAATACTATAAAGCCTAGGAATGAAATGATTGTGAAGAAAGAATTGAAGTGTTCCTTAGGATGGCTACTCAATTGCAGCGATGCTAAGTTTGAAGAAAGGATGGGTTATGATTCTATTGGCATTGAAGAAATGGAAGAGGAACCTTCTTTTGACATGAAGACTCTGTTAGAACCAAGAAGAGAGGAGGAGGAGGAGGACGACGACGATGGAGATGATTACTCTGATTATGAAGATGAGGATAGCGAGTATGAAGATGCATGA

Protein

Gene

>AfisC6G05683
CTTCCCTTTCCTTTACTGGAAGCCCCGGAGATAATCGACTTCAAAATTATGAAGCTAATTACAAGTCCAACAATCCCAAAACCTTCGATTCTATGTTTCGGATGCATCACTAATCAAAAACCCTCCATCAAAATTTTAACTTTGGGCTTCAATCACCATGAATTCGATCTCGCTGCGAAATTTACCAGAGCTGCTTACGCTACTTCTTCTTCAACTACCCCAATTCATGGAAGAAGAACCCAAAACCCTTATTCCTCACCTTCATTATACTCCAGACCAAGCTTGCACGAAATGAAAAAAGACAAAGCGGCGAATCGGGTAAAAGTTTATGAATTCTTACGAAGTCTTGGTATTGTCCCTGACGAGCTAGATGGACTCGAGCTACCAGTCACAATTGATGTAATGAAAGAGAGAATTGATTGTTTGCATTCATTAGGTCTTACCATAGATGATATCAACAATTACCCGTTGGTTTTAGGTTGTAGTGTGAAGAAAAACATTATCCCAGTTCTGGATTATTTGGCTAGTTTAGGTATCCGTAAATCAATGGTCACTGACTTCTTAAGAAGGTACCCTCAAGTCCTACATTCAAGTGTGGTGGTTGATTTAAAGCCAGTCGTGAGCTATTTACAAGGCATGGATATAAGACCTGTAGATATTCCTTTGGTTTTGGAAAGGTATCCAGAAATTCTAGGATTCAAGTTAGAAGGGACAATGAGCACTTCAGTTGCATATTTGATTGGAATAGGAGTTGGCAGACGAGAACTCGGTAGGGTTCTTACTAAATACCCAGAGATTCTGGGTATGCGAGTTGCACGTGTTATAAAGCCTTATGTTGAATATCTAGAGTCAATAGGGTTGCCCAGGCTCGCTGTAGCTAGACTTATAGAAAAGAGTCCGCATATTCTTGGGTTTAGGCTTGAAGATTTAGTTAAGCCTAATGTTGAATGTCTCTTGGAATATTGTGTTAGGAGAGAGTCCTTGAGTTCAGTTATAGCACAGTACCCTGAAATGTTAGGACTTGAACTGAAAACGAAGCTCGAGACACAGCTATGTTTGCTTGAATCTAATATGTTGATAACGGGGCGCGAGGAACTTGGAAGGATGATTGAAAGAATGCCTCAAACAGTGAGCCTTGGTCGTGCTAATGTACTTAAGCATGTTGAGTTTTTGAAAAGGTGTGGATTTTCTTTGAAGCAAGTTAGCAAGATGTGTGTTGCATGTCCACAGATACTAGCTTTGAATGTCGATGTAATGAAGTCGAGCTTTGAGTATTTTAAGATGGAAATGGATAGGGATCTAGAGGATTTGGTTGAGTTTCCTGCTTACTTTACTTATAGCCTTGAGAATACTATAAAGCCTAGGAATGAAATGATTGTGAAGAAAGAATTGAAGTGTTCCTTAGGATGGCTACTCAATTGCAGCGATGCTAAGTTTGAAGAAAGGATGGGTTATGATTCTATTGGCATTGAAGAAATGGAAGAGGAACCTTCTTTTGACATGAAGACTCTGTTAGAACCAAGAAGAGAGGAGGAGGAGGAGGACGACGACGATGGAGATGATTACTCTGATTATGAAGATGAGGATAGCGAGTATGAAGATGCATGAGTATTATGACTTTTAATGTCCTATGTTTTGATGATGCGGAGTTCTATCACTTGAGTTCAGGTGAGCAGAAGCTACAACTCCTCCAATTCTTGTAGACTTCAATTATTTTCTACATTAAAAGTTAATAGTCTTATCATGTACTTAATTATGAGTTTTGAGATTTTATTGTTATTTTTTCTCTTAGGAAAACAAAAAAATGGGTATGTTATATTAATAAAGCTTCATATGAGCATCATTCACCGTCTTCCTGATGAAGTATGAAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020271396.1	8.2e-98	transcription termination factor MTERF4, chloroplastic
Swissprot	Q9ZT96.1	5.4e-78	Protein RUGOSA2
trEMBL	A0A5P1EDU4	5.9e-98	Transcription termination factor MTERF4, chloroplastic

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G02990.1	69.50	1e-172	603	BSM;RUG2	Mitochondrial transcription termination factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G05683	AT4G02990.1	423	127	2	70	491	98	519	69.50	1e-172	603
AfisC6G05683	AT2G44020.1	446	209	4	45	490	48	480	50.22	3e-122	436
AfisC6G05683	AT2G21710.1	315	226	3	154	467	284	596	27.30	6e-35	145

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02536.11	mTERF	Family	155	464	345.6	2e-103

Gene Ontology

Accession	Ontology	Name
GO:0003690	F	double-stranded DNA binding
GO:0006353	P	DNA-templated transcription, termination
GO:0003727	F	single-stranded RNA binding
GO:0005739	C	mitochondrion
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008380	P	RNA splicing
GO:0009506	C	plasmodesma
GO:0009507	C	chloroplast
GO:0009658	P	chloroplast organization
GO:0009793	P	embryo development ending in seed dormancy
GO:0019843	F	rRNA binding
GO:0042255	P	ribosome assembly
GO:0042794	P	rRNA transcription from plastid promoter

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15032	MTERFD; mTERF domain-containing protein, mitochondrial	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network