result

Gene information

Detail information of AfisC6G05965

Location

Gene	Chr	Start	End	Strand
AfisC6G05965	chr6	1049710462	1049714793	+

Sequences

CDS

Protein

Gene

>AfisC6G05965
ATGCCTGGGTCGACCCTATGGTCGACCATTATGGATGCATGGTCAACCTATAGGTTGCGGTTTCTACAGCATATTCTGCCTTGTTCATTTCAACTTTTGAGCAATGATTCAAGCACTACAAAGATGAATTACAACATGAAATTTGACATGCACAAACAACAAAACATAGACGATGATCTGGAAAATATTTCACTCAAATCCGACATGAAATCAAAGAGATATCGGCTCTCAAAGTTGAACCAAGACAAAGAATTCACTGTAAACTACAGATTGAGAAATACAGGTTAGAGTAAACCAAAATAACAACGTAAATTGCATCCGGATTTTTACTAGCAGCTTATTTTTGCTAGAGGTGTGAGTTTTTACTCACCTTATATACTTTTGAGCGAATCTAACTTGGAAGCTAGGATCTTTTGCCTTGAATTAGTTGTAGAAACCTATAACTTGAAAAGAACAGACAAGCATCATAAAAAAATATAAGTTATAGATAAAATTTCTCTCAAATAAAACAAACAGAGGATGAAATAAAGGTTTTGATGAGATTACCTGTTAGAATCTTGATTTGCTCAATTTCTCTCTTTGATTTTCCTTTGATTTTGCTTAATTTTGAAGTTAGATTGGAGATTAGAAGAAGTAGCTTTTTTTGTTTCTTTACTGGTTGTTTACAGGGAAAGTTAGAATGTGAAAGAAAATGAACGTACAGTTCATTTCCAACTCTCCTCTCATTCTAGAAATGGGTTTGGGCTTGAACCCATTACCCAATATCCTATAAGATAATACTTAGTCTAAAAATAAACTAAGTTAATTTATGTAAACACTTTTATTCACCATATTTTCACATATTTAAACCAAATAAATTTTATTCAACAAATGTTTATGTTTACCAAAATGATTCACAATATAAATAAAAATTATTTCTGCCATAAAATCAATTTCTATTATTAAAACTCCATTTTTAATTAAATACTTCAATTTACACTATTAATTACATAAAAAGCTATTTTTAACAACAAAATTTACACAAAAATCATTTTCTTGTCCAATTGACCACAACAAACCTATTAACAACATTTTTACATCCAAAAATTACTTTAGAACAAAATTTCACCTTTTTATTTATAAAATATATCATAATAAATTCAAATGCTTCATTTCAAATTAGTATAAAAAAATCACATTTGGCAATAATTTGCAAAATTATTGCATTTTACGAAATTAAAATCATGAAATGTTCAATTTTCCCTCAAACTAACATAATAAAGTTTTTAAAACTTTATTTTTAGCAATTTACATTTATTTCAACAAATTAATGTTAAATTAAATTCTTTTATCTCATTTAATTAATTTATTGACCATCGAATCAATAAAATATCTTTATTCATAATTTATTACTAACCAACCCATCTCACTTCTATTTTATTTATTCAAAATCTATTGCTTATTCAAAATAAATGATTTTAACAAATTTCCCCTCTTTAATTTATTTTATTTCTCTAATATAAAATTATAACCATAGTTAAATTTAATTTCATAGGTCATCACCAAAACCAGGGTTGCTACACAACTCATAGCTATATCATCGAAAACAAATACAAGAAGACACATAGAGGAAAATATATATGCTAAACTTCTCAAATTACGATATAATACACACTCACACACTTGTCACCTTTAAAGCCCAACGTACGAAGTGGCTAATGTCCCTATACCTAAAAAATCTTGGAGTGACTCGAGTATTATATAAATAATAGACGGATCAGACTGTATCTAAATTCCATTGTGAGAACAAAATAATAAAGCATGGTAACCTAAGGTACGAGTCGTATAAAGCGTAGCATAATATCCAAAATAACATCACCGCTACATACTATGGAATATCTTACTAATAATAATAATAATCACCCATAAAAAACATATAATATCATAAGCATCATGACATACATAAAGTGGGTGATATCAAAAAATACATATAAACCTCACAATACTAGGGACGAGTACGCAACATGTCCATAAAAACCAAAAATAAAAGTGTGAACCATAATTCATACAAAACTCTGAAATCATCAACAAAGCTATCTATCTTGTCTTGTATTCCTTGGAAGTGAAGACTTCCGACTACCAAGCTTTAGGGGATATACCAACTCAAATAAATAATCAAAGTCGATAAAATATTCAATGAACAAAACCATATTTCCCGACCCATTCACTACACCAGAAAAGACTTTTGGTAGCGTTGAAAAAACGCTACCATAAGTTATGGTAGCGTTTTAGAGAACGCTGCTATACGACATGCAACTAAAAGTCTAAAACTTTTTGTTGCGTTGTAGTAAACGCTACCAAAAGTCACTTTTAAATGCAACTATAGGTATTTTCTGTAGGATTTAAAAAATGCTACCAAAAGTCACTTTTAAATGCAGCTATAGGTTTTTTCTGTAGCGTTAAAAAAACGCTACCATAAGTCTTCATTTTTTGATAGCATATTTTAAATGCTACTATTTACGGTTGATGGTTTATACCATTTCCAGCAATCGCTTATATACTATTCATATTAAAACGAACGATCAATCGCATAATTTTCATATATTCAAACAAACAATTAAATCACATAATTAGCATATACAAACAATCAATCATATGATCATCATATTCAAATAATTGCAAAAACATGCTAATCTCACAATCAAATATAATATCCATAATCAATTCGATAGTAGTTTTTCAACAAAATAAGTCACATACTACAAGCATTCACAGACAAGTTTCCACAAATGGTACTAACAAAATACGACAACATATATAACAATTAAATTCATGTTCGTTGCTTGATTACCAATAGTTCTTTGTTGTCGACAGTCTTTGCTTTGAAATAGCTAATTACCTGCAAACGAGTTTAACAATCAACAATATCATACTAATATCATATTGAAGTCTCACAATTGGACAACAAATATGTGATGGTTCATTATATTTTCTCATTCTGACTGAATAATCAATAGAGAAAAACCATTAGCAACATAATAACCATGATAAATAAAAGAAGATATGTTTTATAAAATACGTATATAAAAGGACAGCAAATATGCAACGATGTTAGATTTCTTAGAGTTAACAAAACAAATGCATTAGTAATCTTTGATGAATTGATTACAAAAATTTAAATGCAGTTATTAGTAATCATTGTTGGCTTGTATGAACCATAACATCAGGAAATTCACTTGTACAAATCCTAATAAACAAGTTTTTAACACTGTCTCCAGTATCAAGCAGCATTTGAATGCATTGAACTTTGAATCAAAAGCCACCGAACTAGCTTACTTTCTAGCCTAACAACCAGATATCTCCACAAACACTTCGGTGTCATCATCCAACTCGTTTATTACACTAGTACTACTAGGTTGCCTATTAACTTCTTTCCCATACAACAAAACTTCCGTATGCTCACTGAATTATAATCTTCACACTGAAAATATCTAAACCAACTGTTAAAATTTAAACGTTTCTATAATTGAATCAAAACGAACTATAGTTAGCTGAAATTGAATCAAAAGCACGCATTGACTCTATTTAGTCTAGAATAGTACGAATGATGAACAAATCATGTTGATTTAAGATTAGCAGTTGCCACTCTGTTTCTTAAATGAAGCCACCAGGTCTATCTCTACTCACATACAAACTTGTTATAAGTTGACCCTCCCATCTTCTAACCTCTTCTTTCCCTTACTACTATATATACGTAACCATAACCAACTCTTCTTTCACTTCTTATCATCACTCATTTGCATACGTCTGTTTCACAAAGAAAAAGAAAAGGAAAGAAAAATGAATACAGACATGTCCACTCTTTCTCCAGTTATAAATTCAAAGGGAAAGAGATCAAAACGCTCTTGAGCACCTACAATAGAAGAGTACCTTGCTCTATGCCTAATGATGCTTGCAAGTGGAGAACATGAGATCGATTAAAGTCTACTTAAATTAGAATCAAGTGCAGCAGCAGTTAGAGAAGAGTACAAGTGTAATGTGTGCGGGAAGGCATTTGGGTCATTTCAAGCACTTGGTGGACACAAGGCCAGCCATAGATCAACTAAGCAGCAACTGCAGCAGATTGCTGATCTCTATCAATCTCACTTGACTCTATCCGAATCCGAATCTATACCTACACCTATACCTATTGTTTCTGGAAGTGGAAGGATGCACAAGTGTTTGATTTGCTTCAAAACGTTTGGGTCAGGGCAGGCTTTGGGTGGACATAAGAGGCGTCACTATGATGGAACTATTGGAAGTGCAGCGAAAAGTGGATTCACTACTTCATCTATAAGTGGCTTTTTCTACTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_012836724.1	1.6e-20	PREDICTED: zinc finger protein AZF1-like
Swissprot	Q9SSW1.1	1.7e-17	Zinc-finger protein 1
trEMBL	A0A022RC17	1.2e-20	Zinc finger protein ZAT10 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G19580.1	50.00	3e-18	88.6	AZF2;ZF2	zinc-finger protein 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G05965	AT3G19580.2	94	30	3	105	191	106	189	50.00	3e-18	88.6
AfisC6G05965	AT3G19580.1	94	30	3	105	191	106	189	50.00	3e-18	88.6
AfisC6G05965	AT5G67450.1	96	39	2	104	191	96	188	47.92	4e-18	88.2

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13912.3	zf-C2H2_6	Domain	105	129	45.3	5.1e-12
PF13912.3	zf-C2H2_6	Domain	167	191	36.4	3.2e-09

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001047	F	core promoter binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0008270	F	zinc ion binding
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009416	P	response to light stimulus
GO:0009737	P	response to abscisic acid
GO:0009793	P	embryo development ending in seed dormancy
GO:0010200	P	response to chitin
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042538	P	hyperosmotic salinity response
GO:0043565	F	sequence-specific DNA binding
GO:0048235	P	pollen sperm cell differentiation
GO:0055062	P	phosphate ion homeostasis
GO:2000280	P	regulation of root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network