result

Gene information

Detail information of AfisC6G06795

Location

Gene	Chr	Start	End	Strand
AfisC6G06795	chr6	1176324426	1176325741	+

Sequences

CDS

Protein

Gene

>AfisC6G06795
ATGGATCCAGAACCGGGGAGATGCAGGAGAACAGATGGGAAGAAATGGGGATGTGCAAAAGATGCGCCGCTTGAGCAGAAGTACTGTGAAAAGCATTTGATAAGAAACAGACCTCGTTCAAGAAAGCTAGTGGAACAACGCAAGACTAAGCACAAATCTAGCATTGGGTCATCTAGTACAAATGCCGAAGACAGCGTCAAGAATATTAAAACGGCAATTGAGCTGAATGATTCGGTGCAGACTAACAACTTTGGCGAAGAGAAAGGGTAAACAATAATTATGTTTGGTCATGTGACATTTTCTTGCAGTGATACAAGTTTGGTTGGTACTTTCTTTGAAATGCATCTTTGTTTCTAGTAAACACATTAACAAATAATGAATAAAAATAGATGTATTATTAAGTAGATCAAACAATTGCAATGATCAAATATAGCGTTATATAGTTGATTGAATAATTAAACGTTGTGAACTTAGATGAATTTTACAATGCTTTGATCTCTATAAATTTGAGTCCGATCTGTATAATCATCTGTGATACAATGATGATATAGCTATTAAAATTTAAAACTTGCCTACATTCCCAATTTTGAATGCTTGATTGAATGCTCTAAGTTGTTACCCGTACGCTGACATTGTTACCTGTACACCGACATTGGCCTGCTATGAAGTTGTTACTTGTACATTGACATTCTGCCTGTTATGGTTTCTTAGTCATCTAACATTTGCAAATCTACAATTTAGCTATGTTTTAGGTCTTAATTCTCTACCCTAAAACCTGTAGGTACAGAGAGTGGCCAAAGAGCAGCTATTCAGAAACCCAGGCTTCAGATAAACAACCTGATGCACTGTATTCTTCCATTAACACAGGCTTAAAATTCAACACCATAGGTGCGCACTCAGTCATGCAACGCTACACTGAGTTACCGAATCTGAACTATAACGACACAAACAACGTTTGGAACCCATTCATTCATTCCACTGGCTCTGCTGACTGCGATAAACCAGCACAAACTTATTTTGATGCCTGGTCTACTGAGAACAACAGTGCTAATCTTCCATTGCCAACCCTAAGCTTATCGATCCCTACTGCAATTGGGGAAGACTCCACTCAGGATATGAAATCACATCAATTGTATAACTGGATGGGGCTTGATTCTACTGTTGGGGGGCCGTTGGCTGAAGTGCTTCATTCTAGTAATTTGACTTCTCATGAGTCAAGTCCCAGAGAGAGTTTTGTTTCTCCGCCTTCTGGCATTTTGCAGAAGTCCATTGCTACTCTCTCTGATAGCAGTATGTTTGTACACTTATTAAATTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020262445.1	1.5e-34	uncharacterized protein LOC109838406
Swissprot	Q9FRG8.1	8.2e-14	Transcription activator GRF9
trEMBL	A0A5P1EZX7	1.1e-34	Growth-regulating factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G37740.1	58.62	4e-16	81.6	AtGRF2;GRF2	growth-regulating factor 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G06795	AT4G37740.1	58	24	1	58	226	283	58.62	4e-16	81.6
AfisC6G06795	AT2G22840.1	45	12	1	45	195	239	73.33	1e-15	80.5
AfisC6G06795	AT5G53660.1	44	11	2	45	107	150	75.00	3e-14	75.5

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08879.7	WRC	Domain	3	45	57.7	6.6e-16

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0016021	C	integral component of membrane
GO:0005739	C	mitochondrion
GO:0005773	C	vacuole
GO:0005829	C	cytosol
GO:0005524	F	ATP binding
GO:0005635	C	nuclear envelope
GO:0005794	C	Golgi apparatus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006995	P	cellular response to nitrogen starvation
GO:0008285	P	negative regulation of cell proliferation
GO:0009505	C	plant-type cell wall
GO:0009506	C	plasmodesma
GO:0009570	C	chloroplast stroma
GO:0009624	P	response to nematode
GO:0009631	P	cold acclimation
GO:0009739	P	response to gibberellin
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0009941	C	chloroplast envelope
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0050826	P	response to freezing
GO:0019760	P	glucosinolate metabolic process
GO:0046686	P	response to cadmium ion
GO:0019904	F	protein domain specific binding
GO:0030912	P	response to deep water
GO:0043565	F	sequence-specific DNA binding
GO:0045309	F	protein phosphorylated amino acid binding
GO:0048046	C	apoplast
GO:0048364	P	root development
GO:0048366	P	leaf development
GO:0051365	P	cellular response to potassium ion starvation
GO:0061062	P	regulation of nematode larval development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network