result

Gene information

Detail information of AfisC7G02371

Location

Gene	Chr	Start	End	Strand
AfisC7G02371	chr7	476363615	476365797	+

Sequences

CDS

>AfisC7G02371
ATGAAGGCACAACAAGATAGGACAGACAATGCGATACTCAGTGCTAAGAACGAATCCCTTAAAAATGACAATTACAGGCTTCAAGCTGCACTAAGAAACGTGATGTGCCCTAATTATGGCGGGCCTGGCATTCTTGGAGAAATGTCATATGATGAACAACAACTCAGACATGAAAATGCCCGCCTCAAAGATCAGCTCGAACATATATCTTGGTTTATCTCTCGATACACAGGCCAAGTTCAGATGAAATCATTGGGGCCTACACAGTCTCTGATGATGCCATCACTAGAGCTCGATATGATCAATACTTATTCAAGGCATTTCAATGACCAACAACAAGCAATGGGAGTTTGTAATGATATAGCTCCAGTTCAAAATAGTATTTTGATCATGGATCAAGGTAAAGGATTGGCCTTAGATTTGGCTTTTACAGCATCTGAACACTTACTGATGTTATGTACAATGAATGAGCCATTGTGGGTTAATAGTAATGGAGGAATTGTTAATGAAGTCTTGGATTCTGAAGAGTATAAGACATTGTTTAATTGGCCTGTTGAACTTAAGCAACAAAGTGAAGGAGTTAGGATTGAAGTCACAAGAGATAGCGGGATTGTTATGATGAATAGCATTACTTTGGTTGATTCCTTCTTCAATGCTAATAAGTGGTTGGAGTTATTTCCTACTATCGTGAGCAAAGCGAAAACGTTGCAAATTATTGCTGCAGGGATATCTAGTCATGGCAATGGCTCTCTTCATTTGATGTTTGCGGAGTTTCAAGTTCTATCACCATTGGTGCCTCCACGAACTTGGTTGACTGTTGATATTCCTATTGATGGATTTCATGGACTCGAAATGTCCCTGACTCATTATAGAAGGCGGCCATCTAGATGTATCATTCAGGACATGCCTAATGGTTATGCTAAGGTGACATGGGTCAAACATGGAGATGTACAAGATACCCAAGTCCATCAAATATTTGACAAACTTGTTAACAATGGTGTTGCCTTTGGTGCAACGAGATGGCTCTCCCTCTTGTGA

Protein

Gene

>AfisC7G02371
GAAAGTTTAATGCCTTGGGTGAAATCTGAAGAATAGTTTTGCAACTTGCTGCACCTCCTCAATTGGTATGTGTAGTATTTCTTATATAACAGAACTCTCAGTATGTTATATGTATGTCTGTACTTATGAAATGTATGTGTGTGTAATCCTTGATTTCAATATATATTTCCTTAACCAAATAATACATTCAATCTATCAATGGCCTTGAGGAGTAACATAGTATAAAAAGTCATATCCTTCACAATAGTTTTATAAAATTGTTTTTCTTTGACCATAATTCATTAATATTAACTTAAATAAATGTAGGGTGTTCAAGGAATACCCTCACCCAGACGACAAGCTACGATTAAAGCTGAGCCAAGAGTTGGGACTTAAACCTCGTCAAGTCAAATTCTGGTTCCAAAACAAACACACTTAGATGAAGGTATCATTTATGTTAACATACTAAAAAAGTAGAGAATTTAAAAAGATAAAAAATAAAAATAAAAATGAAAAAAAACTATCAGAACAAAAATTATAGGTTGAAAATTTACATACTAATCATGGATATATGTTGTGCTGTAGGCACAACAAGATAGGACAGACAATGCGATACTCAGTGCTAAGAACGAATCCCTTAAAAATGACAATTACAGGCTTCAAGCTGCACTAAGAAACGTGATGTGCCCTAATTATGGCGGGCCTGGCATTCTTGGAGAAATGTCATATGATGAACAACAACTCAGACATGAAAATGCCCGCCTCAAAGATCAGGTATATTTATACACAATAAGTACCGCATATCTAATTCATCTGCAAAGGAGATTCTACATGATTTTTTAATATCGTGGTTCACTTATATCTTGGAAAATTCAATTTTTCAACAGCTCGAACATATATCTTGGTTTATCTCTCGATACACAGGCCAAGTTCAGATGAAATCATTGGGGCCTACACAGTCTCTGATGATGCCATCACTAGAGCTCGATATGATCAATACTTATTCAAGGCATTTCAATGACCAACAACAAGCAATGGGAGTTTGTAATGATATAGCTCCAGTTCAAAATAGTATTTTGATCATGGATCAAGGTAAAGGATTGGCCTTAGATTTGGCTTTTACAGCATCTGAACACTTACTGATGTTATGTACAATGAATGAGCCATTGTGGGTTAATAGTAATGGAGGAATTGTTAATGAAGTCTTGGATTCTGAAGAGTATAAGACATTGTTTAATTGGCCTGTTGAACTTAAGCAACAAAGTGAAGGAGTTAGGATTGAAGTCACAAGAGATAGCGGGATTGTTATGATGAATAGCATTACTTTGGTTGATTCCTTCTTCAATGCTGTAAGTTACGGAAATGTTATATACATTGCTTTTGGTACATGATTATGTATGATATCTATTTAAATTTATGTTTTGGATTTGTATTTTCTAGAATAAGTGGTTGGAGTTATTTCCTACTATCGTGAGCAAAGCGAAAACGTTGCAAATTATTGCTGCAGGGATATCTAGTCATGGCAATGGCTCTCTTCATTTGGTACATATAAAACCTTTTTTCATACTTAATTTTTGTCGAATGCTGCAATATTATTAGTGTTATTTCATGACTTGAATTATAATTCTGACTTGTGAAGATGTTTGCGGAGTTTCAAGTTCTATCACCATTGGTGCCTCCACGTGAGGCTCACTTTCTTATATAATGTCAACAAAATGTCAATGAAGGAACTTGGTTGACTGTTGATATTCCTATTGATGGATTTCATGGACTCGAAATGTCCCTGACTCATTATAGAAGGCGGCCATCTAGATGTATCATTCAGGACATGCCTAATGGTTATGCTAAGGTAAGTAGGCTTATCTTTTCATTTCATTATTTACTGTTGGGAAAATTTAATTTTTCTTTAAGACTCGAAAGACCAAGTTTTGTTTTACATCCCGAGGGATTTATGTTCCCTTAATATACATTTATACCTCTGATGCATAACATATGTATGCTAATAATTTTCTATGTTACAAACACACTCATTTCTGTCATATAATATGGTAAAATCAAAGACCTTCGATTTAAAAAATAATTATCTACAGGTGACATGGGTCAAACATGGAGATGTACAAGATACCCAAGTCCATCAAATATTTGACAAACTTGTTAACAATGGTGTTGCCTTTGGTGCAACGAGATGGCTCTCCCTCTTGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020262583.1	8.7e-120	LOW QUALITY PROTEIN: homeobox-leucine zipper protein ROC3-like
Swissprot	Q336P2.1	2.1e-86	Protein RICE OUTERMOST CELL-SPECIFIC 3
trEMBL	A0A5P1F627	2.4e-119	START domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G46880.1	41.12	7e-75	277	HB-7;HDG5	homeobox-7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC7G02371	AT5G46880.1	394	173	12	1	345	166	549	41.12	7e-75	277
AfisC7G02371	AT4G04890.1	360	199	7	1	345	117	467	38.06	1e-68	256
AfisC7G02371	AT4G21750.2	365	200	7	1	345	117	475	38.08	4e-68	254

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01852.16	START	Domain	142	270	36.4	3.1e-09
PF01852.16	START	Domain	291	343	40.5	1.7e-10

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009828	P	plant-type cell wall loosening
GO:0009845	P	seed germination
GO:0009913	P	epidermal cell differentiation
GO:0010091	P	trichome branching
GO:0048364	P	root development
GO:0048497	P	maintenance of floral organ identity
GO:0048825	P	cotyledon development
GO:0090627	P	plant epidermal cell differentiation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network