result

Gene information

Detail information of AfisC7G02453

Location

Gene	Chr	Start	End	Strand
AfisC7G02453	chr7	492793146	492795304	-

Sequences

CDS

Protein

Gene

>AfisC7G02453
ATGTTGATGCAGCAAAAACCAACCGTGTATATACCGTCGTGGTCGCCGTTGTACGAAGATTTGACTCCCGTAGACGTGCTGCGAGCTTATGAGAACGAAGATGAGTCTGACGACGAGTTTTCCGCGTCGGATGCAACGTACTCGTGCGACGAGTTTAGGATGTACGAGTTCAAAATTAGAAGGTGCGTTCGAGGGAGGAGCCATGACTGGACTGATTGCCCTTTTGCTCATCCAGGTGAGAAGGCCAGGAGGAGAGATCCGAGAAAGTATCATTATTCTGGTACCGCTTGTCCTGATTTTCGTAAAGGTATTATTCAATGTTTGATTTATTTTTCTATCATGTCGATCTTTAGCGAGTTTAATCATTGTTCGTGGCATGCATGAGTAGTATATCGATACTTGTCTTTATGGGGTGGTTATAGCTTAAATCTTCGTACTTTAAATTGTAATAATGAAATAGTTTAATTTGACATTAAGTCGGTAGATGTTAAGTCGCCATTATTTAGGTTCTTTAAGCATGAATCTTTTTGTGATGTGAAAAGTATATATAAAAACAGTATGTGTGAGGAAGCGCTTAATTAATTTGTTCATTCATCAATAAAAAAGGATAGATTAAACAGCCATTAAATATTTTCTATGTCAAGGGCCTATTGGTATGTTATTATTTGCTACTTTTTAGGGTTGCAAAAACGAGAAATTATGTACGTATTTCAAAGTTCGAAGTTCAAACAGTTGATTATTATTAGCATATTAGTATATTATCGGTATTTCATTGCTTTATTTTAACTGTAGATTAGTATTGTGAGTGATACTTTCTGATGCATAACTTTTGGATTATACGTAGACTCTTCTAGAGGCGTAACGTCGTTCGTACATCCAACTGTATAATTTTAAATTTGATTAAATTTTATGCTTTTAAATATTTTGTTTGTACGATAAACAATAAAATATTTTTGAATGAATTATTAGCCTTGTCGTCAAATACAGTTATTTGTTCTCGTTTCAAATACTGCGAGTGAATATAAACAACTTCCACATATATTTTTGGTACATCTAATTTGGGATTATTTATTTAATAATAATAATATTAATAAAATTGTCGTCTTTAATTAATCTCGTTATAGATGTCTAATAATTATTTATAAGTACTAGACATTAAGAATTTTTTACGCATTTTTTCCTTTTGCTTTTTCGTCATTTTTTTAACAATACACACTTAAAAACGGCAAAACTAATGAGCTTTAGTTAAACAGCCTTCAAATATCTCATTCTTACATCATAGAGTTGAATCAATTAAAATCCTTCTAGCTGAGCATGGTTATTTCTTCGATAACGTAAATTTAGTTTGATGGTTGAAGATGCTAGTGTTTTTAAAATGCAAGAAACAAGATGTTAGGAGCGCTTTTTAAAGTGCAAGAAACAAGATAATACATTAGTAATCTAGTATAGACTTATTATACATGTTTCTTAATCATGGTTGATAACCAGGCTTATACTTATCATCTTGTTCATGTTATACATATGTAGTCTTTAATGGTTTATCATTGAAGGTTCTCCCTAGTGTCCGGTATATCAAATACTTACATGTTACACTATATACTATGCTGTAATCAGGCAACTGCAAAAGAGGAGATGCATGCGACATGGCGCACGGTGTATTCGAATGCTGGCTGCACCCGGCCCGTTACCGCACCCAGCCATGCAAAGACGGAACGGGCTGCCGCCGCCGGGTCTGCTTCTTTGCCCACACGCCCGATCAGCTCCGGGTCCTCACACCCGCAGCCTCGGCCTCCTCCACCACCATGGATTCTTACGACGGATCCCCAGCCCGTCGCTCCCCACCCGCATCCCCGAGCTCCCTCCTCGAAAGCCTCCGCAAACTCCACATCGCCCGCAAGTACTCCAACACCTGCTTTGGGTCCCCCACCAGCGTCGGCGGGTTCTGCAGCCTCCCTTCCACCCCAACCCCCACCCGTGTCGTTAGCGGGTTCGACCTCAACGGGTTTGCTGATGAGGAATGCTGCACTGATCAGAGGGTTGAGAGTGGCCGGGCTTTGCGGATGAGGATGTATGAACGGCTCAGCAAAGAAAGCGGTGTTACCGATAAAAATGAGGTTACTGGGCCTGATGTGGGCTGGGTTTCTGATCTGCTCATGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	QEX51215.1	4.4e-85	zinc finger CCCH domain-containing protein 2-like isoform X1
Swissprot	O82199.1	7.2e-77	Zinc finger CCCH domain-containing protein 20
trEMBL	A0A5J6NB87	3.1e-85	Zinc finger CCCH domain-containing protein 2-like isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G19810.1	46.35	2e-72	269	AtOZF1;AtTZF2;OZF1;TZF2	CCCH-type zinc finger family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC7G02453	AT2G19810.1	356	106	13	6	283	11	359	46.35	2e-72	269
AfisC7G02453	AT4G29190.1	353	106	12	7	283	11	356	46.46	2e-70	262
AfisC7G02453	AT2G25900.2	273	130	4	5	264	46	314	46.15	4e-61	231

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0000932	C	cytoplasmic mRNA processing body
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003727	F	single-stranded RNA binding
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006979	P	response to oxidative stress
GO:0008270	F	zinc ion binding
GO:0009409	P	response to cold
GO:0009793	P	embryo development ending in seed dormancy
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0010150	P	leaf senescence
GO:0010187	P	negative regulation of seed germination
GO:0010200	P	response to chitin
GO:0010494	C	cytoplasmic stress granule
GO:0061157	P	mRNA destabilization

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network