result

Gene information

Detail information of AfisC7G05578

Location

Gene	Chr	Start	End	Strand
AfisC7G05578	chr7	1008569742	1008572709	+

Sequences

CDS

Protein

Gene

>AfisC7G05578
TAAAATTGGAGGAACTTCCGTCTCCTCCACAAACCCTAAATCCAACTCATGTCATCCTCCAAATTATTTTGCAACTACTGCCACTCTTCCAACTACAACCTCAATGGCTACTCTTGCCCACATCACAACACTATAGCCGACCTCAACGCTCCTTTAGATTTTCTCGATTCTTCCAATCCCAATACTATTTACACCACTACTACCACAGCAACCTCCACTAATAATAATAGTCACAGTACTAGCGCTCAAGGGTTGCAGGAGTTCCAATTTTTGGGAAACAATGAAGTCGACGCTCTGGCGTGGTTGTTCAACGACAACCCGCCTAAAGAGGAGGCGCGACCGGAAGAGAGGGCCTGCGGCCCTAAACGGCATGACCGACACGTGGTCGGGCCGATGGGCTTTAGCGATTATCTCGAGATGGATGGATTTCGAAATTCGTGCAATAATATGGGCGGCAGGTTGACGTTTGATGTTTGCGTGAGCGGTACGAGTTCGGCCGATTCGATGATTAGACACTCGCCTCCTGCGCCTATGGAGATTGCTTCAACCGTCGTTGGTAACATTGTGAGTTTTGTTTGTTGATCTATCGATTTAATTAGTAGGGCATCGAATATCATGAATTTTTAAATTTTGATCCTCAATTGCTCGACTGTTTTCTGATAGCCGACGATTTGAATGATGGAACGGGTTTACGTAACGAAAGGAAATTAATGAGCGTGAGATTTATAGTTGTGAAATTTCTCAGTAGATAAAAGATTCTTTTTATGGCAGATAGTGTGCCGGAATAAAGTGCAAGATAATAGTGCCAACGTTTTTAATCATTTCGCTCTTTTGCTGTCTAACATGTTGCATTACGCTTTTGGCATAAAGGTTTAGTATATTCTGTTCAATGTTCATTCTTTGTATTTTTAGAAGATGATCTTTTTGCAATATCTCATTGGCTGATTATGATAATATACGTTAAAGCACGAATAGTGATATTGAATGCAGATTGTTTATTTTATATCTCCTAAACAATATCGAAATGGATTTAGAGTATGATTTTTTTTGAAAATTATATATCCCAATTTGACTAGTGTTGCCAAAAGCATCCAACAAGTATTATTTATTTATTTTTTATAACAAAAATGATGCTTAATTTTAAGCAGAATATTCATATTAGTGTCTTGTGGAATCAAACTGAAGACCTCTAAAACACAATCTGACCAGCATATTATTCTTCTTTGTATCAATATACAAATAATACCCAATAGAGGTATGACCAGAATGATATTTACCGATATTTTGCTACTAGGTGTCCTCACTTAGTTATTAAGTATCAAGAACTTATCCAAATTTCAAAATTTCCAGCAAGTTACGTACCAATAACAACGTTTCACGTGTACTGTTTTTTTCAAAATAAAACATATCATACTTACCCAAATTTATAAAATTCAGGTAATTATAAACATGCTACCCCTTGCTCGGGTAGCAACCGTAGCATAGAGTAAAAAACAATGTTGTTGGGCACGCTAGACATAAAATATTGCCAAACTATGATACAAGTAAGATTTTCAATATTTTAATTTGACTGTTATCATGGAGGATGTCACTTCAGACAGGTTCAATTTCCATATCCTACTTCCATCCTAACTTTATCTGTACCATTCATTTTTGTACCATTTATCTGAATCATTCGTTTTTGTACCAATTCATTATTTAAAATTACGATGTAATTCAATCAACAATTAAATCGTGTGATGTAGGGTTCAGATTGAACTGGATACATGAGGACATTGAATAATTGAATATGGGAAAAGAGAAATTGAGCTGATCAAAGTTATCGATGAAACAAGAAAATTTGCATACTTAACCAATTCTTGGATTCAATTTTCACAACGTGAACTTTTGGTTTTTTTTAAAGAGATCACGGAAGCAGTGATTGTCCCTTTACAGAAAAGAATTCTTTTAAACTTTGCTCTGTTCAACCTGACATTTTCAGGAACAACCCTTTTTTATAAGTATACGTACTAGGTAGCTTTATGGTATTAAATTGCTACAAAGATACTAAATTACAAAAATAATCGAGTACTTACAAAAGTGTGTATATTATGTTGATGATCATACAAATAGAATACTGTGGACAATAGAATGAACCTCAAAACCCCATGAGTACAGTACATTTTATTAACTTACTGTAGCGTTTTGTTACAGGACAAGACACCAACAAACGATAAATGAAGCTTACATCATCTAATATGCAATTAGTAACCCAATTTCACTATGTTTACGCATCTGCATGCAAACTTCAAAACCAATTATTTAAAACCATATTTAAAGCTGATTAAAAGTTCAATAAAAAGATATTTCATTTTTACAATAGAATACATATTTGGTTTGTGATACCATGTCCTTTCTCCTCTTTTAAACATTTGCAGGCAAAATAAACACACAAGTATAGACTTGAAACTCCCCTGAAAACTTTATTTACATGTAGATGAGGACTCGTTTGTACAACGACGCATCAAGCTGCAGTTATACTAAAGAGCAAACGGGCGAGGGCACCACCTCAAACCAGCCCGACCCGAACACGGATCGAGAAGCTAAAGTACTGCGCTACAAAGAAAAGAGAAAGAAAAGAAGGTACGAAAAGCAAATTCGATACGCTTCTAGAAAAGCTTATGCTGAAATGAGGCCGAGGATTAAAGGTAGGTTTGCAAAGACACCGGAAGTCAGTAATGCTCCGGTTAACGAAGATAATAATGACAATGATAATATTGTTTCTAATTATGATCAGGAGAGGTTTGATTTTGGATGGTACCATCAGCAATCTTGATTTGGTTAGTTAATATTATTATTATTGCTATTATTATTCCTATTGTTAATTTGTTGCTATTTATATTTATGTTAATTATAGGTTATAGATAAGCTCTAGTTCTGTGATGAAAACGAATAATGCAGAGCGGATGATTTGTGATTTGTATGATGA

Functional annotation

Database	accession number	e-value	annotation
nr	ONK73575.1	1.1e-43	uncharacterized protein A4U43_C04F33070
Swissprot	E5RQA1.1	1.6e-12	Protein GRAIN NUMBER PLANT HEIGHT AND HEADING DATE 7
trEMBL	A0A5P1F5C7	7.8e-44	CCT domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G15840.1	51.14	2e-17	86.7	BBX1;CO;FG	B-box type zinc finger protein with CCT domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC7G05578	AT5G15840.1	88	30	2	173	247	260	347	51.14	2e-17	86.7
AfisC7G05578	AT2G24790.1	61	18	1	187	247	211	270	68.85	1e-16	84.0
AfisC7G05578	AT5G57660.1	63	23	0	191	253	270	332	63.49	2e-16	83.2

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06203.11	CCT	Motif	206	248	61.8	4.1e-17

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005730	C	nucleolus
GO:0007623	P	circadian rhythm
GO:0008270	F	zinc ion binding
GO:0042802	F	identical protein binding
GO:0009641	P	shade avoidance
GO:0009658	P	chloroplast organization
GO:0009909	P	regulation of flower development
GO:0010018	P	far-red light signaling pathway
GO:0010099	P	regulation of photomorphogenesis
GO:0010161	P	red light signaling pathway
GO:0010223	P	secondary shoot formation
GO:0010229	P	inflorescence development
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0030154	P	cell differentiation
GO:0043565	F	sequence-specific DNA binding
GO:0048576	P	positive regulation of short-day photoperiodism, flowering
GO:0048579	P	negative regulation of long-day photoperiodism, flowering

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network