result

Gene information

Detail information of AfisC8G00622

Location

Gene	Chr	Start	End	Strand
AfisC8G00622	chr8	118343233	118345330	+

Sequences

CDS

>AfisC8G00622
ATGGCAGCTGATCAGGAAGGATCAGAAAATCCAGACCTTTTAGACTGGTTCGATGACTCGCTCCAATTTCTCCCATCATTTCTCGAAGATCAATACTCGATATCAGACAACATCCAAGATATGGATTGGTGGGCTGACCAACCATTGGACCCAAACCAGGACAATATCTTCGAGCTCCCAACTGCAGCTTCAGCCACAGATTCTCCAGTAGAACCTACAAACATGCCTCAAGATTCATCAATAGCTCAGCATGAGTCCTGCAAAAAAAGGAAGAGGGATGAAAAGGGCAGTACTGGCGCAAATTTACCAGAAAGCAGCAGCAGGAAAACATCAAGTAAAGCTAATGGAAACAATTCTTCTAACAACGGCAATAGCAAAGAGGTGAGATGGGCCGAACAGCTGCTAAACCCTTTAGCAGCAGCAATTGAATCGAACAATTTGTCACGTGTTCAGCATCTGCTTTATGTTCTGCAAGAGCTAGCATCGGCAAACAGTGATCCTAATCACCGCTTAGCTTACCATGGCCTACGCGCCTTAAGTCAGCATATTGATGGTAACCTTACGCATGGTGACAGGAACCATACTCCACCGCTAACATTTGCCACCGTTGATCCAAAAACATTCCGCTCATCCCTGATAAAATTCCATGAAGTAAGTCCATGGTTCTCCTTCCCCAATTTCCTGGCAAACTCCTCTATCCTCCAAACCCTAAACTTTGTGAACGCTCAACAGCCTAAAAGTATCCACATCGTTGATATCGGTGTCTCTCATGGAATCCAATGGCCGACATTTCTTGAATCACTATCACGCAGATCCAACAGCCCTCCCCCGCTCATCAAACTATCAACGGTGGATGTTGACTCGACACAGCCCGCTCCATTTTCAACTGCACCGCCTGGTTATGATTTCTCCGACCACCTCCTCCGATATGCAAAATCTCTAAACCTCAACCTCGAAATCGAACGGATTTCTTCCATAGCAGACATTGTCCAGTTAAACCAGCCATCAATTCTCGTGTTCTGCATACAGTTCAGAAACCTTAACATATCTTCCTTAAAATCGGTCAAAAGCATGAAGCCCGATATGGTGATCCTGACGGAGATCGACGACGGTGGAGAGGAGGATGAGGTAGTCAGCTTCGCGAAGAAGGCGGAGACGACGTGGAGATTTCTGGAATCGACGAGCGCGGCGTTCAAAGGGAAAGAGTGCGTGGAGAGGAGGGTGATGGAAGGGGAGATGGCCAGGGTGTTGGGGAAAGAGTCGAAATGGGAGAGGAGGAGGGAGAGGATGGTAGGGTTAGGGTTCGAGGAGTTAGGATTTGGCGAGGAGGCGGCAGATGGCGGGAAAGGGCTGTTGAAGAAGTACGATGGAGGTTGGGAGATGGTCAGATCGACGGCTGGGATTGCGTTGTGGTGGAAAGGTTGTTCGGTGTCGTTTTGTTCCATTTGGAAAGTGGGGAAGACAGAGGATTAA

Protein

Gene

>AfisC8G00622
CTCATGGTCCCAAAACTCCAGAAAAAACCCATTTGTTCCTATTATCATGTGCCCACCAATCATGTACCTAATAATATTAATAAAACAACATTAGAGAATAAGTTATAAAAACTAATATATATCGTCATCTCTCAAACTTGCAAAAATACTTAACTAATCAAAGTACAAGGAATAAACTAATTACCTGCCAGTCGAAACTCCAGTTATAAATTTAAGCCTGTTATTATAATCCTAATCACTGTCACCCCTTCTCGGATTACCAATCTACATGAATCAAGTTCATCATATTCCCACACTACCCAAACTATATCAAATCTCTTGCATAACAGGTAAACACATACGATTTTAAGAGAAGGAAAAAAAATCATGGCAGCTGATCAGGAAGGATCAGAAAATCCAGACCTTTTAGACTGGTTCGATGACTCGCTCCAATTTCTCCCATCATTTCTCGAAGATCAATACTCGATATCAGACAACATCCAAGATATGGATTGGTGGGCTGACCAACCATTGGACCCAAACCAGGACAATATCTTCGAGCTCCCAACTGCAGCTTCAGCCACAGATTCTCCAGTAGAACCTACAAACATGCCTCAAGATTCATCAATAGCTCAGCATGAGTCCTGCAAAAAAAGGAAGAGGGATGAAAAGGGCAGTACTGGCGCAAATTTACCAGAAAGCAGCAGCAGGAAAACATCAAGTAAAGCTAATGGAAACAATTCTTCTAACAACGGCAATAGCAAAGAGGTGAGATGGGCCGAACAGCTGCTAAACCCTTTAGCAGCAGCAATTGAATCGAACAATTTGTCACGTGTTCAGCATCTGCTTTATGTTCTGCAAGAGCTAGCATCGGCAAACAGTGATCCTAATCACCGCTTAGCTTACCATGGCCTACGCGCCTTAAGTCAGCATATTGATGGTAACCTTACGCATGGTGACAGGAACCATACTCCACCGCTAACATTTGCCACCGTTGATCCAAAAACATTCCGCTCATCCCTGATAAAATTCCATGAAGTAAGTCCATGGTTCTCCTTCCCCAATTTCCTGGCAAACTCCTCTATCCTCCAAACCCTAAACTTTGTGAACGCTCAACAGCCTAAAAGTATCCACATCGTTGATATCGGTGTCTCTCATGGAATCCAATGGCCGACATTTCTTGAATCACTATCACGCAGATCCAACAGCCCTCCCCCGCTCATCAAACTATCAACGGTGGATGTTGACTCGACACAGCCCGCTCCATTTTCAACTGCACCGCCTGGTTATGATTTCTCCGACCACCTCCTCCGATATGCAAAATCTCTAAACCTCAACCTCGAAATCGAACGGATTTCTTCCATAGCAGACATTGTCCAGTTAAACCAGCCATCAATTCTCGTGTTCTGCATACAGTTCAGAAACCTTAACATATCTTCCTTAAAATCGGTCAAAAGCATGAAGCCCGATATGGTGATCCTGACGGAGATCGACGACGGTGGAGAGGAGGATGAGGTAGTCAGCTTCGCGAAGAAGGCGGAGACGACGTGGAGATTTCTGGAATCGACGAGCGCGGCGTTCAAAGGGAAAGAGTGCGTGGAGAGGAGGGTGATGGAAGGGGAGATGGCCAGGGTGTTGGGGAAAGAGTCGAAATGGGAGAGGAGGAGGGAGAGGATGGTAGGGTTAGGGTTCGAGGAGTTAGGATTTGGCGAGGAGGCGGCAGATGGCGGGAAAGGGCTGTTGAAGAAGTACGATGGAGGTTGGGAGATGGTCAGATCGACGGCTGGGATTGCGTTGTGGTGGAAAGGTTGTTCGGTGTCGTTTTGTTCCATTTGGAAAGTGGGGAAGACAGAGGATTAATTGGAGGGAAATCATTGTTTTCCGTTTTGGATGAGTTTTGTAACATAATTCATGGGTTTAGCCTTTTAGGGAAGTCTGTGGAATTGAGACATTTTTGTGTGTTAACGTACTTAAAAAGATTTGTAGTTTATCAGTCTTCTTCTGTAAACGTGTATTTTGAAAAATTCACATCTTAGGAACTTAGAGCATTGCCAGTGGAATTGGCTCAAACCTCAATGTTTTATTCAAGTTTATTGGACCAACTGAGGTTCCAAAGTGG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_019709953.1	3.4e-109	nodulation-signaling pathway 1 protein
Swissprot	A1DQP9.1	3.9e-94	Protein NODULATION SIGNALING PATHWAY 1
trEMBL	A0A8B7CE52	9.8e-111	protein NODULATION SIGNALING PATHWAY 1-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G13840.1	41.25	6e-88	321		GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G00622	AT3G13840.1	514	241	17	13	484	16	510	41.25	6e-88	321
AfisC8G00622	AT4G37650.1	406	237	14	125	484	137	529	27.09	1e-27	121
AfisC8G00622	AT3G49950.1	398	234	15	130	483	26	407	26.13	2e-22	103

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	132	484	163.6	5.6e-48

Gene Ontology

Accession	Ontology	Name
GO:0005488	F	binding
GO:0009651	P	response to salt stress
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0031323	P	regulation of cellular metabolic process
GO:0042446	P	hormone biosynthetic process
GO:0044763	P	single-organism cellular process
GO:0048519	P	negative regulation of biological process
GO:2000032	P	regulation of secondary shoot formation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network