result

Gene information

Detail information of AfisC8G01572

Location

Gene	Chr	Start	End	Strand
AfisC8G01572	chr8	323225755	323227566	+

Sequences

CDS

Protein

Gene

>AfisC8G01572
ATGCAATTGGTACGTGCAAATAGTTTTAGTCGCATCGGTTTTAAATTCAACCGATGCAACTACATTAGTTTGCATTCATTTTCCATCGGTTTGCTACTCCAACTTTCATTTTCCCTCCCCTTAACTTTTCATTTCCCGCTTAGCTTTCATTTATCCCTCAACTTCCCCCATAATCCGTTAATCAACATAGCCACGCAAATACCTCTAAGCTCTCTAATTCACAAACAAAATTCTCAAATCCAAATGAATTGCAAATTCTCGTTTGAAATTCAAATCAATTGAAAATTCTCATTTAAACGATTCGAATTGGGTTTGGAGGGGATGAAGTTGCGGTCGGCTGAAGGAGATGGAGTGTAGGATTCGAGTTAAAGCAGTGGTTTTTGATGAAATGAATGGAATTGAGTGCTTCGGTTGGAGTGCTTTGAGGTGTGGCGAGTAGATTGTTGCGTTGGTGGTGGTTCTCGATTTGAGGTAAAGTGCGGAGGAGGTATTGATTGTGGCGATTGAGGGTACTGGCAGTGGTGACTGGGGATGGTGACGACTTCGACTGCGGAGGTGCTCGATTGTGGTAGGAACTGGATTAAGAGCTTGGGCTTTTTTGTTTATAGAAGTGAAAAAGTTAATTATGGCCGATAGAAGAGTTTACAGAGGTTCAGAAGTGAATGTTTGTTGCAAAATGAAGATTCTTCTGCTGGAAATTTTCAGGCTTTGCTCTCCTCGGATTCTTCTCATGCTGGATTTGCCGGTAAGTTTATTGCATTCTGAATCATTTATGTATGTATAGTTGGATATACCATGTTAACAAGAATTTTATAAAACTATCAAAATTTGGAAACTTGATTATAATTCTTACCGAGATAGGAAAATTTGACTGTTGGACAAACATTCTTGAGAAGCATACAAATCTAACTGTATGGTTTAATGTAAACTTACTGCATGAGAACCGACTGATTTAATAGATCTATGTTGCAATGAGTTTATAATTTGCCTTGTCTTTGATGAATCCGTCAAGTACATAAATTGTACATTTATAAAGATGCATGTCTGGTACTTGGAAGCTTTGAAATTTGAACTGTGATTGTTATTTCTATACTAGTGGTACATATGAGTATGGTCGATATGCTTATGTATTTGATTCAAAACTTACTTTGTTCTATTTATTTCAGGATCAAGATCAATGCTAAACTTTGAAGAAGCATGTAATGGAAGAACCATTAGCCAACAGTTTTACATTCCTAGAGAGATAGAAGAGACGATCGAAGAAGATTTAGACGACTGCCTGCACCAACCAGAGAAGAAAAGAAGGTTATCCGCCACTCAAGTTCAGTTTCTTGAGAAAAGTTTCGAGGTAGAGAATAAGCTAGAACCCGAAAGAAAAGTTCAGTTTACCAAAGAACTAGGATTGCAACCTAGGTAGGTTGCAATATGGTTTCAAAATCGTAGGGCGAGGTGGATAAACAAGCAGCTTGAGAAAGATTATGATGTGCTCAAATTAAAATACAACGCTTTAATGGTCGATTATGAGAGTATGTTGGACGAGAAGGAAAAGCTTAAAGAGGAGGTATGGACCTATATCTCTTTGGTTTTTGTTGAATATGTGCTTAGAACTGTAACCTTTGTCTACTACCTATTAAGCATTATCTTGTTTTCATTATGATTCATAACGTTGCATTTGCAAATATTCAACAACTAGCTCATCTTACAAACAAAGTACTTATACAAGAAAAGCATAATAACACAGCAGAAACAGTGGAAGTAGATAATCTACTCTATCAAAAGTCTGTTATAGACATGAAAAGTGGAGAAAGCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252211.1	3.4e-37	homeobox-leucine zipper protein HAT5-like
Swissprot	A2X980.1	1.5e-13	OsHox16
trEMBL	A0A5P1FEN5	2.5e-37	Homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G01470.1	42.24	2e-24	108	ATHB-1;ATHB1;HAT5;HB-1;HD-ZIP-1	homeobox 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G01572	AT3G01470.1	161	76	3	11	161	3	156	42.24	2e-24	108
AfisC8G01572	AT2G22430.1	90	30	1	82	161	61	150	55.56	1e-19	92.8
AfisC8G01572	AT4G40060.1	90	33	1	82	161	58	147	52.22	2e-18	89.4

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02183.15	HALZ	Family	128	161	40.1	2.7e-10

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009414	P	response to water deprivation
GO:0009536	C	plastid
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0009791	P	post-embryonic development
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0048367	P	shoot system development
GO:0048608	P	reproductive structure development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network