Gene information

Detail information of AfisC8G01589

Location

Gene	Chr	Start	End	Strand
AfisC8G01589	chr8	327033082	327033615	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020275529.1	2.5e-29	LOW QUALITY PROTEIN: myb family transcription factor EFM-like
Swissprot	Q5VRW2.2	1.7e-27	MYB-domain transcription factor NIGT1 homolog 1
trEMBL	A0A6I9SE68	2.3e-29	myb family transcription factor EFM

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G03500.1	70.59	1e-30	127		Homeodomain-like superfamily protein

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G01589	AT2G03500.1	85	25	0	9	93	229	313	70.59	1e-30	127
AfisC8G01589	AT1G49560.1	92	29	2	5	96	184	271	64.13	5e-29	122
AfisC8G01589	AT1G68670.1	88	20	2	12	93	214	299	68.18	2e-28	120

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	15	66	33.4	3.3e-08

Gene Ontology

Accession	Ontology	Name
GO:0000160	P	phosphorelay signal transduction system
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0004821	F	histidine-tRNA ligase activity
GO:0005634	C	nucleus
GO:0006427	P	histidyl-tRNA aminoacylation
GO:0009409	P	response to cold
GO:0009507	C	chloroplast
GO:0009736	P	cytokinin-activated signaling pathway
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0010629	P	negative regulation of gene expression
GO:0010638	P	positive regulation of organelle organization
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0032107	P	regulation of response to nutrient levels
GO:0043565	F	sequence-specific DNA binding
GO:0048449	P	floral organ formation
GO:0055062	P	phosphate ion homeostasis
GO:0080022	P	primary root development
GO:1901699	P	cellular response to nitrogen compound
GO:0090701

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network