result

Gene information

Detail information of AfisC8G01929

Location

Gene	Chr	Start	End	Strand
AfisC8G01929	chr8	386260214	386261662	-

Sequences

CDS

Protein

Gene

>AfisC8G01929
ATGTCTGAATCAGCAAAAAGTCCTGCAATTGAAGAAATAAAGAGAGGAGAAGAACTAATGAAATGTCTTCACGCACATATTAACCCTCACGGCAATGAGTATTGCGATCTACCTAGAAGAGTTCTTCAATCCCTTTCAACTGCTCTTGATCTTCTTGTGCAGCAACAAACAAAGCTCCAGTCATGTTCTCTAACCCAAAGCGTTAATAACAGCAGTTTGAGTTTGAAGAGAGAGAAACAAAGTAGGGAGAAGGCTCCAAATAAGAAAAGGTAAATATAATTATATCATATTACAATATAACCTGTTTTTCTATTACTGTAGGTTTTAATCCATGAGATACCAAGTAATTAACATGGTTATATGCTTTTATATCAGGAAAACAGAAGATTCAAAGTCGATACATATAACAATGGCGCCACATTATGATGGTTATAGATGGAGAAAATACGGAGAGAAGACAATTCAAAATTCTGCTTATCCAAGGTATAAGCTACTTACTAATTCAACTCGTCTAACACACATGAAATTTATTAAGTACTCTGCAAACTTTGTAACCATGTACGAAAAACAAATCTTTTACTACTAAGGAATGGCCTTTTGGCATCCGTATGATTGTTATTGTTCAAGATGGAAATTCTGGTGAACTTGACAGACTGGCGAACGTGACCGATTAGTTAACATACCCTTATTTGAACTCTTGACCTCTCAATTATCAAACTAGACTAGGACTCCGAGGCTTGTTAATTGATTAATTGCTACATCTTGATCATAAATAAATTATATGTATATAAAACATAAAGGAATTTTTACAACTCAACTAACGTAAGTTGAACATTTGTTTTGAATAGGACATATTACAGATGCACGCATAAAAGTGAAGGGTGCCTCGCAACGAAAAAGATACATCAACAAGATGATGATAAGTACAACTATGAGTCTCCCATGTTTCAAGTTATCTATGAAAACAAACACTCTTGCAGTTCTTCCAGAACAAGTAATGACGAATATGTGTTTTGCCACCATGATCAATCCAGTTTCACTGTATCAGAGGCTAAGAAATCTTCCCCTTTTCAAAGTGTTACCGTTGACAATATCATTGATGGCGAACATTCTCATAATTCTCCTCTACTTGATATTGATCAGAACTTGTTTAATGAATTGAGTAGTGCTCTGAAGACTGAAGAGGAGGTTGTGAATTGCGATTCTGCAGTGGAGACGAACAATTTTCATACCAACCCTAATTGGATTCCATATCAACCGGAATATTATCATGACTAGGAGAGTTTACTGAGCTCATTCAGCTAGCATTTTTATTTAGTTTCATTACTATCTCCCGTTTTGTTGGGTGTAGTCATTGCAATGTAATCTTTATGTTCATCAAAAGTGGTGTAGTATGATTGATATCCGTGTCTTTTCACAAAATTAATTAATCAAATATGCTTGACACTA

Functional annotation

Database	accession number	e-value	annotation
nr	THU70476.1	1.0e-14	hypothetical protein C4D60_Mb08t25410
Swissprot	Q93WU8.2	2.6e-12	WRKY DNA-binding protein 54
trEMBL	A0A835UE11	7.7e-17	WRKY domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G40750.1	49.32	1e-14	76.6	ATWRKY54;WRKY54	WRKY DNA-binding protein 54

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G01929	AT2G40750.1	73	27	3	107	178	153	216	49.32	1e-14	76.6
AfisC8G01929	AT3G56400.1	209	129	5	3	197	5	206	28.23	4e-14	75.5
AfisC8G01929	AT4G23810.1	73	36	2	103	174	155	222	42.47	8e-13	70.9

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	107	169	75.9	2e-21

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0007263	P	nitric oxide mediated signal transduction
GO:0008219	P	cell death
GO:0009409	P	response to cold
GO:0009507	C	chloroplast
GO:0009555	P	pollen development
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0009846	P	pollen germination
GO:0010150	P	leaf senescence
GO:0010193	P	response to ozone
GO:0010200	P	response to chitin
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0031347	P	regulation of defense response
GO:0051607	P	defense response to virus
GO:0070301	P	cellular response to hydrogen peroxide
GO:1901002	P	positive regulation of response to salt stress
GO:1990837	F	sequence-specific double-stranded DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network