result

Gene information

Detail information of AfisC8G01932

Location

Gene	Chr	Start	End	Strand
AfisC8G01932	chr8	386896030	386897171	-

Sequences

CDS

Protein

Gene

>AfisC8G01932
CTCTTTCCTCCATTATTATTTTCATATGGTTTCTCTGCCCAGCATTATTATAAAGAAAGATTTGACTTAACCGATTTTGTCACTTATCAATCATTCATGTATAATCAATCCTACTGGTAGATAGTAAACAAAAGTAGAAAACAAAGTACTGCCAAACATAAGGAGATCTAAGAAAACAAATTAATGTCTGAATCAGCAAAAAGTCCTGCAATTGAAGAAATAAAGAGAGGAGAAGAACTAATGAAATGTCTTCACGCACATATTAACCCTCACGGCAATGAGTATTGCGATCTACCTAGAAGAGTTCTTCAATCCCTTTCAACTGCTCTTGATCTTCTTGTGCAGCAACAAACAAAGCTCCAGTCATGTTCTCTAACCCAAAGCGTTAATAACAGCAGTTTGAGTTTGAAGAGAGAGAAACAAAGTAGGGAGAAGGCTCCAAATAAGAAAAGGTAAATATAATTATATCATATTACAATATAACCTGTTTTTCTATTACTGTAGGTTTTAATCCATGAGATACCAAGTAATTAACATGGTTATATGCTTTTATATCAGGAAAACAGAAGATTCAAAGTCGATACATATAACAATGGCGCCACATTATGATGGTTATAGATGGAGAAAATACGGAGAGAAGACAATTCAAAATTCTGCTTATCCAAGGTATAAGCTACTTACTAATTCAACTCGTCTAACACACATGAAATTTATTAAGTACTCTGCAAACTTTGTAACCATGTACGAAAAACAAATCTTTTACTACTAAGGAATGGCCTTTTGGCATCCGTATGATTGTTATTGTTCAAGATGGAAATTCTGGTGAACTTGACAGACTGGCGAACGTGACTGATTAGTTAGAACATACCCTTATTTGAACTCTTGACCTCTCAATTATCAAATTAGACTAGGACTCCGAGGCTTGCTAATTGATTAATTGCTACATCTTGATAAATAAATTATATGTATAAAACATAAAGGAACTTTTACAACTCAACTAACGTAAGTTGAACATTTGTTTTGAATAGGACATATTACAGATGCACGCATAAAAATGAAGGGTGCCTAGCAACGAAAAAGATACAGCAACAAGATGATGATAAGAACAACTACGAGTCTCCCATGTTTCATGTTATCTATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241688.1	8.0e-15	probable WRKY transcription factor 46
Swissprot	Q93WU8.2	6.8e-11	WRKY DNA-binding protein 54
trEMBL	A0A8K0I631	1.2e-15	Putative WRKY transcription factor 70

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G40750.1	53.45	9e-13	69.7	ATWRKY54;WRKY54	WRKY DNA-binding protein 54

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G01932	AT2G40750.1	58	21	2	107	163	153	205	53.45	9e-13	69.7
AfisC8G01932	AT3G56400.1	124	75	3	41	163	56	173	33.87	2e-11	65.1
AfisC8G01932	AT5G49520.1	44	17	1	107	150	222	263	56.82	4e-11	64.3

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	107	163	70.0	1.5e-19

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0030010	P	establishment of cell polarity
GO:0007263	P	nitric oxide mediated signal transduction
GO:0008219	P	cell death
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009555	P	pollen development
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009816	P	defense response to bacterium, incompatible interaction
GO:0009846	P	pollen germination
GO:0009942	P	longitudinal axis specification
GO:0010150	P	leaf senescence
GO:0010200	P	response to chitin
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0051607	P	defense response to virus
GO:0070301	P	cellular response to hydrogen peroxide
GO:1901002	P	positive regulation of response to salt stress
GO:1990837	F	sequence-specific double-stranded DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network