result

Gene information

Detail information of AfisC8G02032

Location

Gene	Chr	Start	End	Strand
AfisC8G02032	chr8	403654553	403656267	+

Sequences

CDS

>AfisC8G02032
ATGAGTAGTACTAATAGAAGTTCTGAAAATTCTATCAATAATCGTTCCCGGAAAAACGAAGAAGATGAAGAAGAATTAGGTGGTCATAATCAAGAAAGAAACCCTAGAAACATAAATGGAGGAAGCTCGAGTACAAGCACAGTTGAAGAAAGTGAAAGATCAAGAGGGAATTCAGGAGGATCTGTTCGTCAGTATAACCGATCAAAGACTCCTAGGCTAAGGTGGACTCCGGATCTTCATCTTTGCTTTGTACATGCAGTTGAGAGACTTGGTGGTCAAGAAAGAGCAACTCCAAAGCTTGTTTTACAGATGATGAATGTTAAAGGACTTAGTATTGCTCATGTCAAGAGTCACTTACAGATGTATAGAAGTAAAAAGATTGATGATTCTGGTCAAGTTATCGGTGAACAAGCAAATGAGATCCAAGGAAAAGAGCAGTATATTAGCAATCTAAGCCACTTTCCAATGCTACATGGAAGACCCTTTGCCACTTCAAGATATGGTGCATCCTCTTGGAGCAGTCATGGATACTGGGTGCACAATAGATGCCTTAATAGAAGTAATAGTGCTACTATCGGAGCAAGAGTTTATGATTCTGCTGCAGAAATGATATTTGGAAGATCAATTAATTGTGCATCCATGACAATCAACGATAATAGAGCTAGTACTAGTTCCAATATAAATCAACAATCTGAAGACTTCATATGGCTTCGAAAGACGTCGTCTAATGCGATACAAAGAGAAGGAAGTCCTTGCACAACAAGAAGAAAAAACAATGACCCCGATTTGGATTTGGACCTATCACTCAATGTTGGATCAAAGAAGGCAAAAGTAGAAATTGAATTGAAAGAAAAAGAAGAAGAAGAGGTTGATAGTACCTTATCGCTATCATTATTTTCAAATTCAAGGCATTTACTAGTCAAAAAGGGTTCACAAGAAGAAGGTGAAAGTGGAAAACATAATGAAAGAGTGGCAAGTACTCTTGATCTCACCATATGA

Protein

Gene

>AfisC8G02032
ATTTAGTAGTCTTAGGATTATTGACTAGGGTTCAAATTAGTTTTGGTATTATATCTTCCATCTTGTTCCTTTCCCACCATCCATCTAAGCAAAAAAAGATGGCTCTCTCCTTTGATGAACTCATCATCATTCGGTATTCGTGCCTTTTCGATGCTTGTTGAACCTTCTTTCGTAATCAATCCAAGAGTTATTACATCACAAAAGAATTATTTGTTATGAAGAAGTTATAAAATCCAAGAAGATACATGAAGGCTAGCTAGCTATCAATTATAAATCTATCAATATTACAACTTTCTCTTCTTTCTCATTTTCTATACCAGCCATGAGTAGTACTAATAGAAGTTCTGAAAATTCTATCAATAATCGTTCCCGGAAAAACGAAGAAGATGAAGAAGAATTAGGTGGTCATAATCAAGAAAGAAACCCTAGAAACATAAATGGAGGAAGCTCGAGTACAAGCACAGTTGAAGAAAGTGAAAGATCAAGAGGGAATTCAGGAGGATCTGTTCGTCAGTATAACCGATCAAAGACTCCTAGGCTAAGGTGGACTCCGGATCTTCATCTTTGCTTTGTACATGCAGTTGAGAGACTTGGTGGTCAAGAAAGTGAGTCAAACTTCAAATTTTAGAATATGGACTCGCTTCTTCTTCATTACTTTTGAATATATAAAAAATATTTTTCTGTATAATATTTTGTGGACTTATCATAATTTGATTGCAGGAGCAACTCCAAAGCTTGTTTTACAGATGATGAATGTTAAAGGACTTAGTATTGCTCATGTCAAGAGTCACTTACAGGTAATTACTAATTAGCATATGTCTCTACAATATATAGTTAACTATGTTGCCTAATTGGTTAACTGACTTCCTTTCTCATTCTTTTTTGCTTAACCGATAGATGTATAGAAGTAAAAAGATTGATGATTCTGGTCAAGGTACTTGTATAATTGTATAATTTTCTATATCAAGTAATATTGCAGTAAAATTGGATATATAGTAACGTATTATATGCTTAATTCAGTTATCGGTGAACAAGCAAATGAGATCCAAGGAAAAGAGCAGTATATTAGCAATCTAAGCCACTTTCCAATGCTACATGGAAGACCCTTTGCCACTTCAAGGTTCTTATATAGTTAATTCTTAAGTATATATAATTGATAATTACATCTCATAATCAATGAACGATTATATGATTTGGATGTTTGGCCAACTAGATATGGTGCATCCTCTTGGAGCAGTCATGGATACTGGGTGCACAATAGATGCCTTAATAGAAGTAATAGTGCTACTATCGGAGCAAGAGTTTATGATTCTGCTGCAGAAATGATATTTGGAAGATCAATTAATTGTGCATCCATGACAATCAACGATAATAGAGCTAGTACTAGTTCCAATATAAATCAACAATCTGAAGACTTCATATGGCTTCGAAAGACGTCGTCTAATGCGATACAAAGAGAAGGAAGTCCTTGCACAACAAGAAGAAAAAACAATGACCCCGATTTGGATTTGGACCTATCACTCAATGTTGGATCAAAGAAGGCAAAAGTAGAAATTGAATTGAAAGAAAAAGAAGAAGAAGAGGTTGATAGTACCTTATCGCTATCATTATTTTCAAATTCAAGGCATTTACTAGTCAAAAAGGGTTCACAAGAAGAAGGTGAAAGTGGAAAACATAATGAAAGAGTGGCAAGTACTCTTGATCTCACCATATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252075.1	7.9e-62	probable transcription factor KAN2
Swissprot	Q700D9.2	1.3e-21	Putative Myb family transcription factor At1g14600
trEMBL	A0A5P1FK71	5.7e-62	HTH myb-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G40260.1	53.85	2e-38	156		Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G02032	AT2G40260.1	156	46	3	23	175	56	188	53.85	2e-38	156
AfisC8G02032	AT2G38300.1	144	37	5	43	174	32	167	60.42	8e-38	154
AfisC8G02032	AT2G42660.1	69	13	0	62	130	42	110	81.16	2e-28	123

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	72	123	37.8	1.4e-09

Gene Ontology

Accession	Ontology	Name
GO:0000719	P	photoreactive repair
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003913	F	DNA photolyase activity
GO:0005618	C	cell wall
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0009536	C	plastid
GO:0009555	P	pollen development
GO:0009650	P	UV protection
GO:0009943	P	adaxial/abaxial axis specification
GO:0010158	P	abaxial cell fate specification
GO:0010229	P	inflorescence development
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0055063	P	sulfate ion homeostasis
GO:0071486	P	cellular response to high light intensity
GO:0080060	P	integument development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network