result

Gene information

Detail information of AfisC8G02748

Location

Gene	Chr	Start	End	Strand
AfisC8G02748	chr8	533004988	533008041	+

Sequences

CDS

>AfisC8G02748
ATGATCAAATCCTTCCTCATCGCAACCTTAACATCTCTGCTATTCCTTCAATCCGAATCCGCTTGCAGTTCCGGATGCCCTCTGGCTATCGGATCCTACTACATCTCCCCGAAACTCAACTTCACCTACATCTCCGCCCTCTTCAACCTCGACTTCTCCAAAATCCCCCCCTTCAACCCCAACATCACCACCGAGCAGTTCATCCCATCTGGCCAGCGTTTAAACATCACCTTCCCTTGCGACTGCGTCGACTCCCAATTCCTCGCCCACGTCTTCTCCTACACCACTCAGCCCTTGGACACCTACGACATCATCGCCAGGGTCGCATACGCCAATCTAACCACCGCAGATTGGGTTGCCAGCTCGAACAACTACAAGCCGACTCGGATTCCGGACGGGGTGAAAATCAATGTGACAATTAACTGTTCCTGTGGCGACGAGGAGGTTTCGGATGATTACGGGTTGTTCACTACGTACCCGTTAAGAAGTGGTGAGAGTTTGGAGTCTGTCGCTGCAGGTTTTGGATTGTCCGGTAAGGAGAGAGTTTTGCAAAGGTACAATCCTGCTGTTAACTTTAGTGCTGGATCTGGCATTGTTTTTGTTCCCACTGAAGATCCAAATGGTAGTTTTCGTCCTTTATTTTCAAGGAAAGGAATTTCTAAGGGGGCATTAGCAGGTATAATTTTGGCTGGAGCATTCGTGATGATTTTGGTTATAGGTTTGTTTTTCTTTGTCCATGGGAGGAAGAAATCAAAACCTGCAACTTTGCCAATCTCATCACATTTTGAAGATAACTCTGCTTCTACTCAGGGCCGTGGTGGTGGAGTTTCATTGGATAAATCTCCAGCATTAACCCCTAGAGCTGGAAGCATGACTCCGAATACAGGTATTACAGTTGATAGATCGACCGAGTTTACATACGAAGAGTTGTCCAAAGCTACAAATGACTTCAATATTAGTTACAAGATTGGTCAAGGAGGTTTCGGAGCTGTTTACTATGCTGAGCTTAGAGGAGAGAAAGCGGCAATTAAGAAGATGGATATGCAAGCATCCAGAGAATTTCTTGCTGAACTCAAAGTTTTGACACATGTTCATCACTTAAATCTGGTGCGCTTAATAGGATACTGTACAGAGGGTTCCTTGTTCCTTGTTTACGAGTACATAGAGAATGGAAATTTGAGTGAACATTTACGCGAAACTGATCGAGAACCATTATCATGGCCTGCTAGAGTTCAGATTGCACTTGATTCTGCAAGGGGACTTGAATACATACATGAACATACAGTTCCGGTGTACATACACCGTGATATCAAGTCAGCCAATATATTGATAGACAAGAACTACCATGGAAAAGTGGCAGATTTTGGGCTAACCAAACTCACTGAAGTTGGAAGCACTTCTCTACAGACTCGGCTTGTTGGTACATTTGGCTATATGCCACCTGAATATGCTCAATATGGCGATGTCTCACCTAAGGTGGATGTATATGCTTTTGGAGTTGTACTCTATGAACTGATCTCGGCCAAGCAGGCTATCGTTAAGTTGAACAACTCTACCACAGAAACAAAAGCATTAGTTGCTTTGTTCGAAGCTGCACTGAGCCAGGCAGACCCAATGGAAGAGCTGGGCGAACTAGTTGATCCAAAACTTGGCGATGACTGCCCATTAGAATCAATTCACAAGATGGCGCAACTAGCAAAAGCGTGTACGCATGAGAACCCACAGCTAAGGCCAAGCATGAGGTCGATAGTGGTGGCATTGATGACACTGTCTTCATCTACAGAAGATTGGGATATGGGATCGTTTTATGAGAACCAGGCTCTGGTTAACCTCATGTCTGGGAGGTAG

Protein

Gene

>AfisC8G02748
TTCAAATAAACAAATATACCTCCCGCGTCATTTGATTCCTCCTCCATTCCACGTGTCACCCTCACATTGACAAATTCCGTCAACTCCCCGCCCAACCCCTTTCTCCTCTTCGACACCAATCCCATCCTCTGAAAACCCAAAATCATGATCAAATCCTTCCTCATCGCAACCTTAACATCTCTGCTATTCCTTCAATCCGAATCCGCTTGCAGTTCCGGATGCCCTCTGGCTATCGGATCCTACTACATCTCCCCGAAACTCAACTTCACCTACATCTCCGCCCTCTTCAACCTCGACTTCTCCAAAATCCCCCCCTTCAACCCCAACATCACCACCGAGCAGTTCATCCCATCTGGCCAGCGTTTAAACATCACCTTCCCTTGCGACTGCGTCGACTCCCAATTCCTCGCCCACGTCTTCTCCTACACCACTCAGCCCTTGGACACCTACGACATCATCGCCAGGGTCGCATACGCCAATCTAACCACCGCAGATTGGGTTGCCAGCTCGAACAACTACAAGCCGACTCGGATTCCGGACGGGGTGAAAATCAATGTGACAATTAACTGTTCCTGTGGCGACGAGGAGGTTTCGGATGATTACGGGTTGTTCACTACGTACCCGTTAAGAAGTGGTGAGAGTTTGGAGTCTGTCGCTGCAGGTTTTGGATTGTCCGGTAAGGAGAGAGTTTTGCAAAGGTACAATCCTGCTGTTAACTTTAGTGCTGGATCTGGCATTGTTTTTGTTCCCACTGAAGATCCAAATGGTAGTTTTCGTCCTTTATTTTCAAGGAAAGGTAATGTGTTATTTTTTTTTTTCCTCCTCCATTTTGCCCGGGCATTGAATACATTGTGCTGATTTGATGATTGATCAGGAATTTCTAAGGGGGCATTAGCAGGTATAATTTTGGCTGGAGCATTCGTGATGATTTTGGTTATAGGTTTGTTTTTCTTTGTCCATGGGAGGAAGAAATCAAAACCTGCAACTTTGCCAATCTCATCACATTTTGAAGATAACTCTGCTTCTACTCAGGGCCGTGGTAATATTTCATTTTTGGAACAATCCCATCCTTTCTGCACATATGTGTTGCTAATGCTTTTGCATAATAGGTGGTGGAGTTTCATTGGATAAATCTCCAGCATTAACCCCTAGAGCTGGAAGCATGACTCCGAATACAGGTATTACAGTTGATAGATCGACCGAGTTTACATACGAAGAGTTGTCCAAAGCTACAAATGACTTCAATATTAGTTACAAGATTGGTCAAGGAGGTTTCGGAGCTGTTTACTATGCTGAGCTTAGAGGAGAGGTCCGTAATCTTTACATAAATACATCTATTTCTAGACTGAGACATTGATTATAGATTGTATCTTGCAGAAAGCGGCAATTAAGAAGATGGATATGCAAGCATCCAGAGAATTTCTTGCTGAACTCAAAGTTTTGACACATGTTCATCACTTAAATCTGGTCAGCATTTCGTTTACATTTAAATTTCAAGTCAGAGAAAACTCAAACTTGATGGAATTACTCATAATGCAGGTGCGCTTAATAGGATACTGTACAGAGGGTTCCTTGTTCCTTGTTTACGAGTACATAGAGAATGGAAATTTGAGTGAACATTTACGCGAAACTGGTAAGTAGTTAAAACCACTTCAATTTCAAAGATGTTACATACATTGCTAGTATAAAAAAACTGTGATTTACTTTCTAGATCGAGAACCATTATCATGGCCTGCTAGAGTTCAGATTGCACTTGATTCTGCAAGGGGACTTGAATACATACATGAACATACAGTTCCGGTGTACATACACCGTGATATCAAGTCAGCCAATATATTGATAGACAAGAACTACCATGGAAAAGTGGCAGATTTTGGGCTAACCAAACTCACTGAAGTTGGAAGCACTTCTCTACAGACTCGGCTTGTTGGTACATTTGGCTATATGCCACCTGAGTAAGTACGGGTTCATTTGGTTTATTTTGTATTTTGTGTTTTGGGTTTTCAACATTAATTACAAAATATGATAAAAGTAGAGAGACGATGAGGAAATAGAAGGAAGATGGAGGGGACGACGGAGGGACGATGGAATGATGAATTGTTTTTCATGCTTTCGTTATTTCTGAAAACACGAAAAAAAAAGTTGTATTCTATTTTGTATGTTAAATTAGATTTTTAAATTGATCGTTTTTATAACATACATGCGGCATGCGCATTTTTATATGGACGAAACTAAAAATGGTAAACCAATCGTAGCCTACATGTTTCCCTTCTACGGTATTTTAAATTACAGACACCTGAGAAACTATGACCTTTTCATTTAATATGTGTGCAGATATGCTCAATATGGCGATGTCTCACCTAAGGTGGATGTATATGCTTTTGGAGTTGTACTCTATGAACTGATCTCGGCCAAGCAGGCTATCGTTAAGTTGAACAACTCTACCACAGAAACAAAAGCATTAGTTGCTTTGGTATTTACTTCCAAACCAGTTATATCATTCTCTATAACGTACAATTAATAAAAAAATTTAACGATTATGTAAAAATTGGACCGTTTAGTTCGAAGCTGCACTGAGCCAGGCAGACCCAATGGAAGAGCTGGGCGAACTAGTTGATCCAAAACTTGGCGATGACTGCCCATTAGAATCAATTCACAAGGTAAACCTCAAAGTTGATTTTGATTCTGATATTGAATTAAGGGGCGTGCTTATGTGTAAATGAACATATATTGAGTGAACAACAGATGGCGCAACTAGCAAAAGCGTGTACGCATGAGAACCCACAGCTAAGGCCAAGCATGAGGTCGATAGTGGTGGCATTGATGACACTGTCTTCATCTACAGAAGATTGGGATATGGGATCGTTTTATGAGAACCAGGCTCTGGTTAACCTCATGTCTGGGAGGTAGTTTACTGGATGTTTTTGGTGCACATCATTTGTTTATTTGTAAATGAAGTCTGTGTATATTGTTGTTCATTATGATCATAATGTGTAAATCTAGAATTTAGTTTTGTCAAAACAGCAAGTTCCTCAATTTGGATATATATCATTG

Functional annotation

Database	accession number	e-value	annotation
nr	OAY64703.1	2.6e-236	Chitin elicitor receptor kinase 1
Swissprot	A0A0P0XII1.1	3.5e-193	LysM domain receptor-like kinase 9
trEMBL	A0A199UIZ5	1.9e-236	Chitin elicitor receptor kinase 1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G21630.1	53.97	0.0	662	AtCERK1;AtLYK1;CERK1;LYK1;LYSM RLK1	chitin elicitor receptor kinase 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G02748	AT3G21630.1	630	259	10	2	615	3	617	53.97	0.0	662
AfisC8G02748	AT1G51940.1	330	174	6	299	615	323	651	43.03	2e-73	273
AfisC8G02748	AT1G10620.1	386	220	7	226	589	265	645	36.01	3e-66	249

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	319	586	164.1	3.3e-48

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000166	F	nucleotide binding
GO:0002752	P	cell surface pattern recognition receptor signaling pathway
GO:0042742	P	defense response to bacterium
GO:0004674	F	protein serine/threonine kinase activity
GO:0035556	P	intracellular signal transduction
GO:0005775	C	vacuolar lumen
GO:0008061	F	chitin binding
GO:0009409	P	response to cold
GO:0009609	P	response to symbiotic bacterium
GO:0009789	P	positive regulation of abscisic acid-activated signaling pathway
GO:0009817	P	defense response to fungus, incompatible interaction
GO:0009877	P	nodulation
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019901	F	protein kinase binding
GO:0031348	P	negative regulation of defense response
GO:0032491	P	detection of molecule of fungal origin
GO:0032499	P	detection of peptidoglycan
GO:0042803	F	protein homodimerization activity
GO:0043621	F	protein self-association
GO:0046777	P	protein autophosphorylation
GO:0071219	P	cellular response to molecule of bacterial origin
GO:0071323	P	cellular response to chitin
GO:1900459	P	positive regulation of brassinosteroid mediated signaling pathway
GO:2001080	F	chitosan binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13429	CERK1; chitin elicitor receptor kinase 1	EC:-	Plant-pathogen interaction	ko04626

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network