result

Gene information

Detail information of AfisC8G02877

Location

Gene	Chr	Start	End	Strand
AfisC8G02877	chr8	551246945	551250928	-

Sequences

CDS

Protein

Gene

>AfisC8G02877
CCAAATTCAAGCTCAAGCTCGACCTTTCAAGTTCAAACTATGGACACGTTGATAAACTCACGCTCCAGCACCCCCGACTCCGACTCCTACGCCACCATCTCCTCCCAACCCCCCAAACGCCGCGCCGGACGCACCAAGTTCCGCGAGACGCGCCACCCCACCTACAAAGGCGTACGACGGCGCAACAACGACAGGTGGGTCTGCGAGGTCCGAGAGCCCAACAAAAAGTCCAGAATCTGGCTGGGCACCTTCCCCACCCCTGAAATGGCGGCTCGGGCCCATGACGTCGCTGCCCTTGCCCTCCGCGGTAGGGCCGCCTGCCTCAACTTCGCGGACTCCCCTCGCGTCCTCCCCGTGGCCGAGAGCTCCTGCCCTAGGGACATCCAACGGGCTGCTGCCGTCGCTGCCGAGATGTTCAGGCCAAGCAAAGAAGGGGCCGATTGCAATTTTAGTACAGTGGAGAGGGGTGATCGTGAAGACGACATATTGCAATATTTGAACGATGACGATTCAGGGTTGGGGATGGAAAGCTACTTTAATGACATGGCCAGAGGGATGCTGATGGATCCGCCACCGCAGTCGCTGGTGCCGGAGTACTATGAGGTTGAGAATGATCTCGGACAAATCTCTCTTTGGAGCTTCGCCTTCTGATTAGTATCACTTATCAGTGTTGTAATTATAGCTAGGTAGCATATTTTGATATTTTGGATCAGCTGCGATGCTCCGAGTAAATAAAGTAATACGCAGCTGTAGGATAAATGTAAAGATGTTATTTTTTTTCTTTTTTTATTCTGAGGATTTTAGATATTACTTGAGAAATTTAGATATTATCTGGGAACTTTTAGCTGGTAGTGTAAGCAATGGAGAGCGATTGAAGACTGTTCCATTTCTTTTTTATTTCTAAAATGGTTGGTCTTCATTCATTGCATGGTACGTATTGTTTATAATTGACTAAAATTTCGTCAATGCTCCCTCCACTGACATAAACTACTGTTCACAACTTCAGAATTAATCTCGTGGCAAACAACTATTCACATGAACAAATACAAGAGGCAGGAAGTGCAGCATATAATGGTTTAGAATGATTCGGACTAAAATTAGTAACTAAATGGAACAACGTGCTGCTTAAAATGACCCAAGTTTAGTCATGCTATAAGTAGAAAATACCAATAAATATAGCACTTTTCTTCTCCAAAATACTCTTCCTCTTTCTCATCGAATTTCTCGTTCATTTTAACTGAAATTTAACCAAAACTTTATACCCTAATGTCTCAATTTGAATCAACACGGAGCATCCAGTTTACCCATTTTTAAGCAGGTCAAATGTTTATCATTTCCTTTACTTTAAACACTGGAATGATATACTTCATCATTCAGTTACCATTTAGGATCCAAGAATTAACATACATTCAGCGGTTTGTACTGTGTTTAGATAAAAATGAGGATATGTACCACTTTTATCAAACGAACTAGCTCAAAATGTTGTAGTGACAGTAGAGACGGTGGTTGGGAAGTGGATGATCATCCTGATGATATATGTAATTCAAAACATGCTAAAAGCACAGCTTGTGAAAGAAGTACTAGAGAAGGCTAGTTGAAAATGAGCTTGTTGTATCACAGACCCTATCCCAAAAATCCGGTTTATCGTTTAAACCAAATAACATATTCAACCAACAATAACAATTACATAGATATGTCCGCGGGTGTGGCGCAGTGGAAATGAGGCTTGACTTCTGATAAAAAGACCCAAATTCGATTCCTACCATGCACTTTCATATCTTATATAAAATTTATCCGGGATATGAAGACTTGGATCAATAGATGGCTTTATCAACAAATATCCAACCATTATAAATACAAAATATATAAATATAAAAAAAATACGATTTTACATAGTTCGGAGTATCATTAATGTATACAGACCCAACAATTATGTTTTTATATCCTACGAGATAGTGATTAAAAATATGATTTCGAAATTATTTATATAATAAATGCAATAATCTGTCTTCTCGACCATACGATTTAACGTCCGAAAAGACGTTCTAACTACAATGAACCGAGTATACGATTATTTGGAAGATGATGACAAAAACCAAATAAAACATTTAACTTGTAACTTTCTAAATACCACAATTGAAGAAACAAACTATAGCATTAAATAACAATAATCTATTCAAATCATCATATATATACATGTACTTACAATAGGAATAAAAATCCAAATTCAAATCCCCACAACATTAGCCAAATCAAATCATTTATTTATAATAAATACTGTATGTGTGTATATAAACAGGTTTTCGTCACATGCTACAATACGACAACAAGCTCCGTCAACCTAGCAATATTTTAATAAAAAAGAAAAATAAGAATGGATCAGACATAGATTTGAATAAATGAGTCATTACTATTCCACATATACTACAAAGATACTATTATGACATGATCGTTGTTTAACGCACAAGTAGATACATTTTCGACCAGTCGCCCTACATGATTGTACTACTGTTTGACATCTAACTTGTGGGTAAATACATCCTAAACCAGTCAGAGGCTTTACATACCTAATGGATTCACGTCCCGGACTAATATGAGGCACTTCATAAATGCTTAAGATCATTTTTCAAAAAGAAAATTGAACTCACACCCTAGACTACTCCGAAGTTGATGTTAACGTATTCTTTCTTAAGTTTGTAAAATCTCTGTTCTTAGCACGACTGACCAGTTAAATTAGAAATAAAATCACGCTTCCATTTTAGAGCAGCAACAAATTAAACATGTTGAAGTAGGTGCGTTATACTATTCAATATTCAAAGAAAAACAAGTGAGACGTGTCATGAATTATTAAACCCATCAAACTGTCTATCTAAATATCTAAACTCCAGCAGTACACATTTTTGCATCTTTCCAACCTGGCAATCTCCTTTGCCGCGGAGTGCTCAATTTCAAAACCTATATAAATCCCCTTCCCCTCATCACTCTCTCTTTAACCAAACACAATCTCAAACCTCCTCCTCCTCCTCCTCCTCAATTATCGAATTCAAGCTCAAGCTCGACCTTTCAAGTTCAAACAATGAACACGTTGATAAACTCACGCTCCAGCACCCCCGACTCCGACTCCTACGCCACCATCTCCTCCCAACCTCCCAAACGCCGCGCAGGACGCACCAAGTTCCGCGAGACGCGCCACCCCACCTACAAAGGCGTCCGCCGCCGCAACAACGACAGATGGGTCTGCGAGGTCCGAGAGCCCAACAAAAAGTCCAGAATCTGGCTGGGCACCTTCCCCACCCCTGAAATGGCGGCCCGGGCCCACGACGTCGCTGCCCTTGCCCTTCGTGGTAGGGCCGCCTGCCTCAACTTCGCGGACTCCCCTCGCGTCCTCCCCGTGGCCGAGAGCTCCTGCCCTACGGACATCCAACGGGCCGCTGCCGTCGCTGCCGAGATGTTCAGGCCAAGCAAAGAAGGGGCCGATTGCAATTTTAGTACAGTGGAGAGGGGTGATTGTGAAGACGACATCTTGCAATTTTTGAACGATGACGATTCAGGGTTGGGGATGGAAAGCTACTTTAATGACATGGCCAGAGGGATGCTGATGGATCCGCCACCGCAGTCGCTGGTGCCGGAGTTCTATGAGGTTGAGAATGATCTCGGACAAATCTCTCTTTGGAGCTTCACCTTCTGATTATTATCACTTATGATCAGTGTTGTAATTATAGGTAGCATATTTTGATATTTTGGATCAGCTGCGATGCTCCGAGTAAATAAAGTAATACGCAGCTGTAGGATAAATGTAAAGATATTTTTTTCTTTTTTTCTTTTTTTATTCTGAGGACTTTAGATATTAGTTGAGAAATTTAGATATTATCAGGGAACTTTTAGCTGGTAGTGTAAACAATGGAGAGCGATTGAAGACTGTTCCATTTCTTTTCTATTTTTAAAATGGTTGGTCTTCATTCATTGTAAGGTACATATTTGTTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010919216.1	1.7e-54	dehydration-responsive element-binding protein 1G
Swissprot	Q9FJ93.1	1.6e-46	C-repeat/dehydration-responsive element-binding factor 4
trEMBL	A0A2S1VVP2	1.2e-54	Cbf-like transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G51990.1	51.42	7e-51	196	CBF4;DREB1D	C-repeat-binding factor 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G02877	AT5G51990.1	212	87	6	3	201	14	222	51.42	7e-51	196
AfisC8G02877	AT4G25470.1	194	79	5	20	201	29	216	50.00	6e-47	183
AfisC8G02877	AT4G25480.1	204	86	3	9	201	18	216	50.00	4e-46	181

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	41	90	50.2	2e-13

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009408	P	response to heat
GO:0009414	P	response to water deprivation
GO:0009536	C	plastid
GO:0009651	P	response to salt stress
GO:0009825	P	multidimensional cell growth
GO:0010371	P	regulation of gibberellin biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0050826	P	response to freezing
GO:0019760	P	glucosinolate metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network