result

Gene information

Detail information of AfisC8G04893

Location

Gene	Chr	Start	End	Strand
AfisC8G04893	chr8	897969844	897971480	+

Sequences

CDS

>AfisC8G04893
ATGTCGCCACCTGATTTAGGTCTCGATCTAAACCTGTCGACCACAAAAACCATTAAAACCCTAACCGAAGAAGATCACTCAATCGAAGGTTACGAGCAAAAGGTCATGGAAATCCAACAACAAATCAGTAAGTTCGAAGAAGAGAGGCGAAAAGTCGAGGTCTTTAAGCGAGATCTTCCATTTTGCATGTTTCTTCTCAATGATGTAATCGATGGATTGAAGATGGAGCTGGAGCAATGTCGAAGAAGAAAACACAGCGTTGTAGAAGAACTATTCATGCCTGTTAAAAGCAGTAAAACAAACGAAGAGAGCTCCGTAAAATCAAAAAACGATGACTGTAAAGAGAAGATGGAATGGATGAGTTCTGCTCAGCTATGGAGCGACAATCATAGCAATTGCAGCGAAAGCATTGATAATGCACACACTGCAAAGAGTGGAGACGGAATAGAAACAGAATCGCTGTCGATATCAGAACGGAAAAGCGCTATTGTGCCTTTTAAGGAGGCGGATTTATCTCTGGGTTGTGAAGCGGCTAAGGAGCAATGCCTTGGTTTACCTGCGAAGTCGAATGAAAGCAATAGATGCCACGTGTCAGGCGGAGGAGGTGGCCAGATGGCGGCGGTTTACGAGGCTCAGCAGGGGTTGAAGAAGGCGAGGAGGTGCTGGTCGCCGGAGCTTCATCGGCGTTTTGTTGCTGCCCTTCAACAACTCGGTGGTCCTCAAGTGGCTACTCCGAAGCAGATAAGGGAACTGATGAAGGTTGATGGCTTGACCAACGATGAAGTTAAAAGCCATTTACAGAAATACAGATTGCATACAAGAAGGGTAGTGCCAAATTCGACAAGTGCTGCTATGAATAGAAGCTCTGTTATGGTAACAGGAGATTTATGGACTAATGGTGAGAATTATACAAAATCGCATCAATCAGCGTCCCCACAGGGACCTTTTCAGATGAACTCATGTTCTCGAGCAATGTCTGATAGCTGTGAAGATGATGGCAAGTCAGAGAGCTGCAACTGGAAATGA

Protein

Gene

>AfisC8G04893
CCTAATTTTCCTCAATATCTACAAATCAAAATTTCTTTTGCAAAAAATATATTTATCATGTCGCCACCTGATTTAGGTCTCGATCTAAACCTGTCGACCACAAAAACCATTAAAACCCTAACCGAAGAAGATCACTCAATCGAAGGTTACGAGCAAAAGGTCATGGAAATCCAACAACAAATCAGTAAGTTCGAAGAAGAGAGGCGAAAAGTCGAGGTCTTTAAGCGAGATCTTCCATTTTGCATGTTTCTTCTCAATGATGGTACCCACAATTAACATTTAATTTTTGACATAAAATTAATCGTATACCTAAACCTCGATCTAAAAAACGCATGCTAATCGAATGTTATTTGTTGAATATTACAACAGTAATCGATGGATTGAAGATGGAGCTGGAGCAATGTCGAAGAAGAAAACACAGCGTTGTAGAAGAACTATTCATGCCTGTTAAAAGCAGTAAAACAAACGAAGAGAGCTCCGTAAAATCAAAAAACGATGACTGTAAAGAGAAGATGGAATGGATGAGTTCTGCTCAGCTATGGAGCGACAATCATAGCAATTGCAGCGAAAGCATTGATAATGCACACACTGCAAAGGTACAGACTTGATAATAATTATTACAAAGCTAGAAAATATTACGAATCTAAATTGGGGATTTTTGTAAATACAGAGTGGAGACGGAATAGAAACAGAATCGCTGTCGATATCAGAACGGAAAAGCGCTATTGTGCCTTTTAAGGAGGCGGATTTATCTCTGGGTTGTGAAGCGGCTAAGGAGCAATGCCTTGGTTTACCTGCGAAGTCGAATGAAAGCAATAGATGCCACGTGTCAGGCGGAGGAGGTGGCCAGATGGCGGCGGTTTACGAGGCTCAGCAGGGGTTGAAGAAGGCGAGGAGGTGCTGGTCGCCGGAGCTTCATCGGCGTTTTGTTGCTGCCCTTCAACAACTCGGTGGTCCTCAAGGTAAAAATTGCATCTTTATTTTGAAATTTACAAAAGGAAGATGACTTTTTTAACCTTTTGTTATTTGTTTTGTAAATGCAGTGGCTACTCCGAAGCAGATAAGGGAACTGATGAAGGTTGATGGCTTGACCAACGATGAAGTTAAAAGCCATTTACAGAAATACAGATTGCATACAAGAAGGGTAGTGCCAAATTCGACAAGTGCTGCTATGAATAGAAGCTCTGTTATGGTAACAGGAGATTTATGGACTAATGGTGAGAATTATACAAAATCGCATCAATCAGCGTCCCCACAGGGACCTTTTCAGATGAACTCATGTTCTCGAGCAATGTCTGATAGCTGTGAAGATGATGGCAAGTCAGAGAGCTGCAACTGGAAATGATTGCGAAGAATGAAGAAGAAGAGGAGGAGGAAGGAGCTGAAGCTTAACTGACATGAGGTTAAATTGATTATGTATGAACAAGTTTTTGCAATTACTGATGTAAAAAGAGTTGAGACCATAGAGCGGAATTTGAACTTGTTGAAGAAATTGATCGAGAGGGATCAGTGTTAAATTTTGAGGAGAGATGGTGAAATTTCTTGTCTCGTTTCATTTCATTTGACTAATTGGTTAAACATATAAAACGTAAATTGTTATAGAATGGTCAATTTTAATTTGCAGGATCACATATTTA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020275529.1	3.9e-80	LOW QUALITY PROTEIN: myb family transcription factor EFM-like
Swissprot	Q5VRW2.2	8.8e-37	MYB-domain transcription factor NIGT1 homolog 1
trEMBL	A0A6I9SE68	2.5e-65	myb family transcription factor EFM

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G03500.1	37.06	1e-43	174		Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G04893	AT2G03500.1	313	130	10	37	307	35	322	37.06	1e-43	174
AfisC8G04893	AT1G25550.1	305	146	9	31	304	11	299	36.72	1e-39	160
AfisC8G04893	AT1G68670.1	307	141	11	31	298	7	300	37.13	1e-39	160

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	219	270	30.8	2.2e-07

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009409	P	response to cold
GO:0009737	P	response to abscisic acid
GO:0009755	P	hormone-mediated signaling pathway
GO:0010638	P	positive regulation of organelle organization
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0031667	P	response to nutrient levels
GO:0044444	C	cytoplasmic part
GO:0048519	P	negative regulation of biological process
GO:0048583	P	regulation of response to stimulus
GO:0099402	P	plant organ development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network