result

Gene information

Detail information of AfisC8G06014

Location

Gene	Chr	Start	End	Strand
AfisC8G06014	chr8	1105133719	1105139183	+

Sequences

CDS

>AfisC8G06014
ATGGAAGAAACTATTACGAGGAAACGGAGAAGCAAGTGGGATGTTACTTCAGAGCCTCAGAATCCAATTGAACGTGATGATGATCCTCCTATCAAATCCAATAATTCAGTAGAATGTGACGTATTTATTTCAGAAATGAAAATTTCAGACTGTGGTCCTACAACAATAGATAATGGAATTTATGGTTTTGATGCAATAATGGAAAGCACAGTCACTTTGTCACTGCCATCTAGAATGGAGACCGATCCTGACGTTGTAAGTAATACAAAAATTGAAGCAGACAAGTTTGTTGAATATTCACAGATGAAAGATGAAGATCCTCCTATCAAGTCCAATAATTCAGCAGACGGTGATGTATTTATTTCAGAGATAAAATCTCAAGACCATGATCCTACAACAATAAATAATGAAAGTAATGGTCCTAATAATGACACTGCAATGATATCATCATTTCCATCGAAAACGGAGACTGATCCTAATGTTGTGAGTACTACAAAAACTGACGCGGATAAGTTTGTTGAATATTCAAAGATGAAAGATGAAGATTTCGACTTGTTACCTGACGAAAGAGTGAAGACTGAAATATCTCCTAAGAAGCATCATAACAATAGAACAGTGTCCCCTGGGCATGAATCATGGAGGCAGAGGAGTCCTGCTATGTCACTATCACGTTCCGGAAAGTCGAGAAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCTGGAGCAGAAGTAGAAGCAGAGGCAGAAGTAGAACCCGAAGCCAGAGTAGGAGCCCTTCATATGGTCATGGGCGGAGATCTTTAAGGAGCAGAAGCCGAAGTAGGAGCCCGTACTATCGCTCCAGGAGAGAACCTGATGATTCAATGGACAGGCGTAGACCAAGAATACCATGCAGAGATTTCGCAGTGGGGCGATGCCAAAGAGGCATTGATTGTAGGTACATTCATGATGATACTTCTCGAAGGCCATATAATCCATATCATAATGTCGGTGAGCGTAAAATTGAAAAAGAAAACGTGAATTTCTCCAAGGAACCAATTGACAACACACATAGAGACACAAGAGTATATCCTCGATATTCAAAAGAACCAGTTGAAAACACTAGTCGAAATGAGAGGGAAAGTCTTCAAAATTCAAGAGAACCAATCGACAATACAAATAGAAATGAAAGAGAAAGTTTTCGTGATTCAAGAGAACCAATTGACAGCCGACACAGAAATGAGAGGGAAAATTTTCGTGATTCAAGAGAACCAATCGATGACATAAATAGAAATGAAAGAGAACCAATCGATAATACACATAGAAACAAGAGAGAAAATTATCGTGATTCAAGGGAACCAATCATCAATACACAGAGAAATGAGAGAGAAAATTATCGTGATTCAAGAGAACCAATTGACCATAGACATAGAAACGAGGGAGAAAATATTCGCGATTCAAGAGAACAAATCGACATCAGATGGAGAAATGAGAGAGAAAATCTTGGAGATTCAAGAGAACCGATGGAGTATACACGTAGAAATGAGAGAGACAATGTTCGAGATTCGAGAGACAGGTTCACTAGAAACGACAATAGACCTCCAGTTGCCTGTTATGATTTTTCTAGAGGTCGATGCCAAAGAGGCTCGGATTGCAGATATGCTCATCATGATTCTTCTTCTTTTGATAATGGGAGAAGCTACAGTAGTTCTAGAGATGAATATAGAACTAGAACTCAAAGAGTCCTTAGAGACACTGTTTGCAAATTCTTTGCTGATGGTTGCTGTAGACGCGGTCAATCTTGCTCTTTCTCCCATGTAATTTTGGGGCCACGTGACGGTGGTAATGGTCAAAATCAACAGCAGCATCAAAATCAAATTCAAAATCAAAATCAGAATTTGAATTTGAATCAACCGCAAAATGCTATCAATCCTCTTCCCTTCCCTTTACAGCCACCAAATATTCAAATGCCACAGTTAGTTCCACCAATGCCTGTCGATGAGCAAATGCCACAAGCTATGCTTTCGATGATCCAAAATGGGCAGAATCAGTTCGTTCCTCAACCAAATTCAAATTTCAACATTCCTGTACAAAATTTGCCTTTTGTTCCTCCTCAAAATTTCAACTTGCTTCCCTCTAACACTGTAGGACAGCAAGTTCAGCAAGCTCTTCCTTTCGCTGCCCCTAATTTCGTAGGACCTACCCTTCAAAACATCCCTTTCAATGATAATCCTATTCCTCAACCTCCAAACCCGGAAAATCAAATAATCGCTTCTGAAATTCAGTCATCTAACATGAGTAATGATATTGCTCAGAAAGTTGTCACAAGTGAGCAAGCTGCTAAAATAACAAACATATCAGCATCTTTAGCGATGTTTTTTGAAAATCAAGGTGCTCTCAATCCTCAAACTGCTACAGAATCAGTTACAGAAACAGAGACTAAGAAAAATACTGAAGTGGAGGTGCAAGAAGCAGTGAAGGAAACCGGAACTGTTAATGAAAAGAAAGGAGGTGAAGGTGAGGAGAGTAAGCAAACCAAAGATGGAAAAGGAATGAAAATGTTCAAATGTGCTATTGTTGATTTTGTTAAGGATGCGTTGAAGCCGAACTGGAAAGAAGGTCAGTTGAGTAGAGAGGCTCATAAAACTATAGTAAAGAAGGTTGTAGAAAAGGTTACAGGTGCAATGCAGAGCCAGAATATTCCGCACACACAGGAGAAAATTGATATTTATATGTCACATTCTAAACCAAAGCTCTCAAAACTTGTTCAAGCTTATGTAGAAAAATATGTGAAGGGCTGA

Protein

Gene

>AfisC8G06014
AGGTCAATTTTAAATTCTGCAAGAGTATGTCAAAAGTTTCCTTCTTTTAACTTTGGGAAAACTGCTAGGAGATAAAATGGAAGAAACTATTACGAGGAAACGGAGAAGCAAGTGGGATGTTACTTCAGAGCCTCAGAATCCAATTGAACGTGATGATGATCCTCCTATCAAATCCAATAATTCAGTAGAATGTGACGTATTTATTTCAGAAATGAAAATTTCAGACTGTGGTCCTACAACAATAGATAATGGAATTTATGGTTTTGATGCAATAATGGAAAGCACAGTCACTTTGTCACTGCCATCTAGAATGGAGACCGATCCTGACGTTGTAAGTAATACAAAAATTGAAGCAGACAAGTTTGTTGAATATTCACAGATGAAAGATGAAGATCCTCCTATCAAGTCCAATAATTCAGCAGACGGTGATGTATTTATTTCAGAGATAAAATCTCAAGACCATGATCCTACAACAATAAATAATGAAAGTAATGGTCCTAATAATGACACTGCAATGATATCATCATTTCCATCGAAAACGGAGACTGATCCTAATGTTGTGAGTACTACAAAAACTGACGCGGATAAGTTTGTTGAATATTCAAAGATGAAAGATGAAGATTTCGACTTGTTACCTGACGAAAGAGTGAAGACTGAAATATCTCCTAAGAAGCATCATAACAATAGAACAGTGTCCCCTGGGCATGAATCATGGAGGCAGAGGAGTCCTGCTATGTCACTATCACGTTCCGGAAAGTCGAGAAGGTATTTATTATTTATTGGTATACATGGTTACTTAGTGCCATCAAGCTTCACAATAGATTTGTGTATTCACAATCTAAGATGGTAACATTATACTTTTTCAGACTTCATTGACCTTTTTTTAGCTAGAAAGACCAAAATTTATGACCATTTGCACAAAAGAACGCCAAAAAGGGCAGTCAATTTTTGAGGCATTTCCAGTATTACGATATAATCCTTCTCCCTGACTGCAATTCTGTAGCTTTGATGTGCTGATGTTTATGAGGTTGAATATAAATACTTTTACACGGAACTAATATGCATTGTGTATTTTTTATCAATTACTGCTGCCAATTCATTTACAGAAAATACACATAAGGTTTTTGCGTTCATATTCAAGATATAAACCCAGTGATCTTGTAAAGTTTAATTTCATAGTTATTCAAGCTCTAGCCCGTAAACTGTTTTTTCTTATTGATTTGAGTTGTGTGTGTGTGTGTGTGTGTTGTGTGGGCGGACCTGCACTCACGCGTGCGTATGTTCATACATATGTATATGTATATCTGTGTACATGTGTGCGTGCATGCATTATCAAGATAAAGTCTCCCTTGAATCATTTTGATGTAAGATGTTAACCTATATCATTTTGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCTGGAGCAGAAGTAGAAGCAGAGGCAGAAGTAGAACCCGAAGCCAGAGTAGGAGCCCTTCATATGGTCATGGGCGGAGATCTTTAAGGTTCGCATTTGTTGAAATAAGTCCCAGTTCTTTATTGATATTTTGATACAGTTTTTGTTTAGGTCTGCCTACAATTTTTCAAATCCACGCGTAGTAGAAGCATACTAATATTATCACACTATATTCTGATTGAATACTTTCCAGTTATGTTACAGTAATAATTTCTGATTGAATACTTTCCAGTTATGTTACAGTAATAATTTCGTACCCATTATATTTTAAGAACTCCAATAATATATATAAATGGCAAATTTGTCCTGAAATGGTAACGCTTCATGTACCTGGAGTAATATATTGTTATGTGTGTATTAGGAATATGTTGATGAGAAGGCTTCTCAAATTTTTAATGAACATACACATACATATGCGTGCGTTCGTGTGTCCACACTCGCATGTACATATATACAAGTACATAACCACTAGTCTGTGGTATTTACATTGAAAAGGAGGGAAAATGGGGATCTAAATTAACATGAAAAAGAAAGTCGCAATGATTTACTGACTAAAGCTATGATTCAAGATGTAAGCTTATGAGAAATGAGAATTCATATAACAACCTCAATTATTTTGGAAAAAAACAAGGAAGATGAAGTGAGAGTGTGTTTGTGTTAGTGCACGTGCGTGTGCGTTTGTGTTTGTGTGTGATTCTTCATCCTTTCGATATGTTATGCAGGAGCAGAAGCCGAAGTAGGAGCCCGTACTATCGCTCCAGGAGAGAACCTGATGATTCAATGGACAGGCGTAGACCAAGAATACCATGCAGAGATTTCGCAGTGGGGCGATGCCAAAGAGGCATTGATTGTAGGTACATTCATGATGATACTTCTCGAAGGCCATATAATCCATATCATAATGTCGGTGAGCGTAAAATTGAAAAAGAAAACGTGAATTTCTCCAAGGAACCAATTGACAACACACATAGAGACACAAGAGTATATCCTCGATATTCAAAAGAACCAGTTGAAAACACTAGTCGAAATGAGAGGGAAAGTCTTCAAAATTCAAGAGAACCAATCGACAATACAAATAGAAATGAAAGAGAAAGTTTTCGTGATTCAAGAGAACCAATTGACAGCCGACACAGAAATGAGAGGGAAAATTTTCGTGATTCAAGAGAACCAATCGATGACATAAATAGAAATGAAAGAGAACCAATCGATAATACACATAGAAACAAGAGAGAAAATTATCGTGATTCAAGGGAACCAATCATCAATACACAGAGAAATGAGAGAGAAAATTATCGTGATTCAAGAGAACCAATTGACCATAGACATAGAAACGAGGGAGAAAATATTCGCGATTCAAGAGAACAAATCGACATCAGATGGAGAAATGAGAGAGAAAATCTTGGAGATTCAAGAGAACCGATGGAGTATACACGTAGAAATGAGAGAGACAATGTTCGAGATTCGAGAGACAGGTTCACTAGAAACGACAATAGACCTCCAGTTGCCTGTTATGATTTTTCTAGAGGTCGATGCCAAAGAGGCTCGGATTGCAGATATGCTCATCATGATTCTTCTTCTTTTGATAATGGGAGAAGCTACAGTAGTTCTAGAGATGAATATAGAACTAGAACTCAAAGAGTCCTTAGAGACACTGTTTGCAAATTCTTTGCTGATGGTTGCTGTAGACGCGGTCAATCTTGCTCTTTCTCCCATGTAATTTTGGGGCCACGTGACGGTGGTAATGGTCAAAATCAACAGCAGCATCAAAATCAAATTCAAAATCAAAATCAGAATTTGAATTTGAATCAACCGCAAAATGCTATCAATCCTCTTCCCTTCCCTTTACAGCCACCAAATATTCAAATGCCACAGTTAGTTCCACCAATGCCTGTCGATGAGCAAATGCCACAAGCTATGCTTTCGATGATCCAAAATGGGCAGAATCAGTTCGTTCCTCAACCAAATTCAAATTTCAACATTCCTGTACAAAATTTGCCTTTTGTTCCTCCTCAAAATTTCAACTTGCTTCCCTCTAACACTGTAGGACAGCAAGTTCAGCAAGCTCTTCCTTTCGCTGCCCCTAATTTCGTAGGACCTACCCTTCAAAACATCCCTTTCAATGATAATCCTATTCCTCAACCTCCAAACCCGGAAAATCAAATAATCGCTTCTGAAATTCAGTCATCTAACATGAGTAATGATATTGCTCAGAAAGTTGTCACAAGTGAGCAAGCTGCTAAAATAACAAACATATCAGCATCTTTAGCGATGTTTTTTGAAAATCAAGGTGCTCTCAATCCTCAAACTGCTACAGAATCAGTTACAGAAACAGAGACTAAGAAAAATACTGAAGTGGAGGTGCAAGAAGCAGTGAAGGAAACCGGAACTGTTAATGAAAAGAAAGGAGGTGAAGGTGAGGAGAGTAAGCAAACCAAAGATGGAAAAGGAATGAAAATGTTCAAATGTGCTATTGTTGATTTTGTTAAGGATGCGTTGAAGCCGAACTGGAAAGAAGGTCAGTTGAGTAGAGAGGCTCATAAAACTATAGTAAAGAAGGTTGTAGAAAAGGTTACAGGTGCAATGCAGAGCCAGAATATTCCGCACACACAGGAGAAAATTGATATTTATATGTCACATTCTAAACCAAAGCTCTCAAAACTTGTTCAAGTAAGTATTATATTTTCTCTTTACTCGGTTATATAGTGAAATCTTTTATCAATTTATACCAGTTTTTTGATCAGTTTTAAAACATATTATGGATGTATGTATGTTTTTGGCACGTTGGCGTTGATTCAACAAACCCCTCTTGGTTCTTTTGTAGAATGCGTCGCAATTTTATATATATATATTGAATGTTGGTGCATTCTCAAAGTTCGTCGGAGGAAAATTACTGGAAAAAATAAACCATTTTTCCATGGCTCCTTTTGCAAATGCGAGACGTGGAAACCAACCTATACGTGTTATTATTTTTGAAAAGTGATCTACATCGATAAAAAAAAATCCTTATATAGTATGTTTGCAATGTAATGCTGGATTTTGCTTGTATAGATATGTTTAACAGAAAGATTTGCATCTCATAACGAATCACATTCATCTGTGTACTTTCATTTGGGCAACCTTAAAGTTGGGGTTTATAAACATTATATCACATAGCTGTCTAAATCGGACGACTGACAATTGAAATTGCAGTTAACAGCGAAGAAAGTTTGTAGTTTGTTTATTGTTGACAAGATCATTTGAATTGAAATAGACTTTTTGGTACTGGAACATGCATAACTGATGTGAAATTGTCATGCTTGAAGAAACTTCTAGTGACATGCTACATTGAAATTGTTCCTAGTTTGTTCCTTCAGTAAGGATTGTGCTTTTGTGAAAATGTCAAATGTTCATCTTTTTCATCAAGTGTCAGTTTGCTTGTACTTATTGCATAAGAGCATTTCAGCACTTTTCTCCTGAATTTTTATTTCAGATAATTACTATATTTCTTATTTTGACCATGCAGTTGAGATCATCTTTTTTTTTTTCAAATAAAAAATTAAAATAAATAGAGAAAAGAGGCCGTGTAAAATTTGTATCCATTAGAGTAATTCTAATTGGGAATCAACCACCCGATAGCACATCACTTACCTGAGTTTCAGAAGCTTGGATAAATTAAAGTTTCACCTTGCGTGATAGTTTAAAATAATATACACAATAATGCCTTTTTTTGAGAATCAAAATTTTAATATATACACTTTTTCGAGATTCAAATTTTCAGGTAAGTGCATATATGTTAATTTTGTATATGATTTTAAGTTGTCACGTAGGGATTACTAGATTTTTTGAAACTTGGGTAAGTAACCCTAATTGCATCCACCAATTGCCAAGTGAAAACTAATTATTTTTTAAGTATTCACTTTGACAGGGCTTTCCTTAGTAACCAACTAATATGATATTTGATGATTATTCTGACTGATTTTGTATTTTATGTGCAGGCTTATGTAGAAAAATATGTGAAGGGCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020704450.1	1.8e-34	zinc finger CCCH domain-containing protein 55-like isoform X1
Swissprot	Q9LIH5.1	1.8e-23	Zinc finger CCCH domain-containing protein 38
trEMBL	A0A835UZG8	8.8e-36	Zinc finger CCCH domain-containing protein 38

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G18640.1	29.66	5e-34	143		Zinc finger C-x8-C-x5-C-x3-H type family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC8G06014	AT3G18640.1	472	189	15	580	924	220	675	29.66	5e-34	143
AfisC8G06014	AT3G26850.2	93	46	0	833	925	173	265	50.54	3e-22	104
AfisC8G06014	AT3G26850.1	93	46	0	833	925	173	265	50.54	3e-22	104

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00642.21	zf-CCCH	Family	529	549	21.8	0.00011

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network