result

Gene information

Detail information of AfisS817G00001

Location

Gene	Chr	Start	End	Strand
AfisS817G00001	scaffold817	36548	37807	-

Sequences

CDS

>AfisS817G00001
ATGTTTAATGTGTCATATAATAATTTGTCAGGGCCGGTTCCGTTGAATTCGAGTATGATGAGATGCGATAGTGTTGTAGGGAACCCACTTCTCGAGCCTTGTACTGGATTTTCTCTTTCAATTCCGCCATCCGATCAAGAAGGATCCACTGGAACTGCACAACCATATATCGATGCACCTCCTTTGACCCCATCTAATAGTGGTAGCGGGTTCAGTTCTATTGAGATTGCATCTATTGCATCAGCATCAGCCATTGTAGCAGTTTTAATAGCACTGATTGTCCTATATGTATATACAAAAAAATGTACCCCTATTGCTTCAATTCGATCTTCTGGTAGAAAAGAAGTAACTGTATTTACAGATATTGGTGTCCCAATAACTTATGAAAGTGTTGTGCGAGCCACTGGTAGTTTCAACGCAAGTAATTGTATTGGAAGTGGTGGTTTTGGAGCGACATACAAAGCTGAAATATATCCAGGAGTTCTCGTAGCTATAAAGAGGCTCTCAGTAGGCAGATTTCAAGGTGTTCAACAATTTCATGCTGAGATTAAAACTCTAGGAAGGTGGCGCCATTCAAATCTAGTGACCCTAATTGGATATCATGTTAGTGAGACAGAAATGTTTCTGATATATAATTATTTGCCAGGAGGAAATTTGGAAAGGTTTATACAAGAAAGGTCTAAGCGAGCAGTGGATTGGAGAATGCTTCACAAGATTGCTTTAGATGTAGCACGTGCACTAGCTTACTTGCATGATCACTGTGTCCCTCGAATACTTCATAGAGATGTCAAGCCAAGCAATATTTTGTTAGACAAAGATTTTAATGCATACCTCTCTGACTTCGGTTTGGCCAGGATTTTAGGGAATTCTGAGACTCATGCCTCTACTGGCGTGGCTGGTACTTTTGGATATGTAGCTCCAGAGTATGCAATGACATGTCGTGTGTCTGATAAGTCTGATGTTTATAGTTATGGTGTAGTGCTTTTGGAGTTGATTTCTGATAAGAAGGCATTGGATCCATCCTTTTCTCCATATGGCAATGGTTTCAATATTGTAcCCTGGGCATGCATGCTTTTACGCCAGGGTAGAGCACGAGAGTTCTTTACTGAAGGATTATGGGATGTGGCCCCTCATGATGATTTGGTGGAGACGTTGCATTTAGCGGTTATGTGTACTGTTGACTCTTTAACTATTCGACCTACAATGAAGCAAGTTGTTCAAAGGTTTAAGGCAACTACATCCACCAAATTGCTAGCATGA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	PKA49734.1	2.1e-184	LRR receptor-like serine/threonine-protein kinase RPK2
Swissprot	Q9S7I6.1	4.4e-155	Receptor-like protein kinase 2
trEMBL	A0A2I0A2I0	1.5e-184	LRR receptor-like serine/threonine-protein kinase RPK2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G02130.1	74.34	1e-176	615	CLI1;RPK2;TOAD2	receptor-like protein kinase 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisS817G00001	AT3G02130.1	417	96	3	1	410	732	1144	74.34	1e-176	615
AfisS817G00001	AT1G69270.1	431	154	3	1	417	123	540	58.00	7e-139	490
AfisS817G00001	AT3G13380.1	444	226	10	2	410	716	1133	35.36	1e-63	240

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	141	338	146.3	9.8e-43

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0016021	C	integral component of membrane
GO:0004702	F	receptor signaling protein serine/threonine kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0005777	C	peroxisome
GO:0007169	P	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0005524	F	ATP binding
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009554	P	megasporogenesis
GO:0009556	P	microsporogenesis
GO:0009651	P	response to salt stress
GO:0009664	P	plant-type cell wall organization
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009808	P	lignin metabolic process
GO:0009826	P	unidimensional cell growth
GO:0009846	P	pollen germination
GO:0009942	P	longitudinal axis specification
GO:0009945	P	radial axis specification
GO:0010073	P	meristem maintenance
GO:0010152	P	pollen maturation
GO:0010234	P	anther wall tapetum cell fate specification
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019901	F	protein kinase binding
GO:0051260	P	protein homooligomerization
GO:0046777	P	protein autophosphorylation
GO:0048354	P	mucilage biosynthetic process involved in seed coat development
GO:0048508	P	embryonic meristem development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network