result

Gene information

Detail information of Asa0G03817

Location

Gene	Chr	Start	End	Strand
Asa0G03817	scaffold29590	20818	21918	-

Sequences

CDS

>Asa0G03817.1
ATGTTTGCTCTTCTACTTAATAGGATTATTGTTAAAAATACAATTTCAAACCCAACGATCGTAATATCTCAAAATCAGTTCATAAAATACTTGTCAATCTCTCGAACTCCTGAAAATGGTGTCAGAAAATGGTCATCGTCAGCCAAAGAAGACGAGACTATCGCAGAGGCGGCCAAATTTCTCAAGGCCTATGATTTCACAGATGCCCAAATCACAAAAATAAAGGAGAAACTTCCAAATTACCCCTCATATAATCCGACGAGTATCATGAAAACTAGGTTGGATTTCTTCCTCGACCTTGGGTTTTCAAACGCTCAGCTTGCAAGGTTCGTGTCCGTCAATCCCCTAGTGTTGGAAACGAGCTTAGAAAATCGAATAAAGCCAAACATAGCACTACTTAAATCCTTCTACAAAACTAGAGAACAATTAGTCCGTGCTCTTATTTCCAGCTCCCCTTTACTGCAAAGCAAATTAGAAACGAATTTCTTCCCTAATATTAGAACATTGACGTATCATGGTGTACCTCACGACAATATTTTAAAGTTTTCAATCAAATTTCCAAAGATGCTACTTCAGCCGGCAAAAAAGTTTGAGAAGATGGTACAATTAGTCGCTTCTAAGGGGTTTAATCCATGTAGTGTTTTATTTTGCAAAGGACTTCATACCATTTCTGGAACAAGTCCATTGACATGGAGGGAAAAAGTGAGTCTGTATAAGAAATTTGGATGGTCTGATGAAAATTTTGCCTCTGCATTCCTTAGATATCCGTGGTGCATGCTTGCATCAGAAAAGAAGATTGAACGGGTAATGGATTTTTTTGTTAATAAAAGGCAGTATGAGCCATCTTATTTGGCAAAATACCCAGTGCTTATTTCTTTAAGTTTGGAGAAGAAGATCATACCGAGGTGTCTTGTTATGGATATACTTGTGAAGAAGCAACTGGTTAAGAGTAATAGTTCAATAGAGCATTTTACGATAAGCAACAAGGATTTCTTGGAGAAGTACGTTACTGCTTATCAAGATCAGGCACCTGAGGCACTAAATGCTTACAGTAGCAGTTATACTTTTACCTGTTTGGAAAATAAATGTCAGACTTCATAG

Protein

Gene

>Asa0G03817.1
ATGTTTGCTCTTCTACTTAATAGGATTattgttaaaaatacaatttcaaaCCCAACGATCGTAATATCTCAAAATCAGTTCATAAAATACTTGTCAATCTCTCGAACTCCTGAAAATGGTGTCAGAAAATGGTCATCGTCAGCCAAAGAAGACGAGACTATCGCAGAGGCGGCCAAATTTCTCAAGGCCTATGATTTCACAGATgcccaaatcacaaaaataaaggAGAAACTTCCAAATTACCCCTCATATAATCCGACGAGTATCATGAAAACTAGGTTGGATTTCTTCCTCGACCTTGGGTTTTCAAACGCTCAGCTTGCAAGGTTCGTGTCCGTCAATCCCCTAGTGTTGGAAACGAGCTTAGAAAATCGAATAAAGCCAAACATAGCACTACTTAAATCCTTCTACAAAACTAGAGAACAATTAGTCCGTGCTCTTATTTCCAGCTCCCCTTTACTGCAAAGCAAATTAGAAACGAATTTCTTCCCTAATATTAGAACATTGACGTATCATGGTGTACCTCacgacaatattttaaagttttcaatcAAATTTCCAAAGATGCTACTTCAGCCGGCAAAAAAGTTTGAGAAGATGGTACAATTAGTCGCTTCTAAGGGGTTTAATCCATGTAGTGTTTTATTTTGCAAAGGACTTCATACCATTTCTGGAACAAGTCCATTGACATGGAGGGAAAAAGTGAGTCTGTATAAGAAATTTGGATGGTCTGATGAAAATTTTGCCTCTGCATTCCTTAGATATCCGTGGTGCATGCTTGCATCAGAAAAGAAGATTGAACGGGTAATGgatttttttgttaataaaagGCAGTATGAGCCATCTTATTTGGCAAAATACCCAGTGCTTATTTCTTTAAGTTTGGAGAAGAAGATCATACCGAGGTGTCTTGTTATGGATATACTTGTGAAGAAGCAACTGGTTAAGAGTAATAGTTCAATAGAGCATTTTACGATAAGCAACAAGGATTTCTTGGAGAAGTACGTTACTGCTTATCAAGATCAGGCACCTGAGGCACTAAATGCTTACAGTAGCAGTTATACTTTTAcctgtttggaaaataaatgtcAGACTTCATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_019701790.1	4.1e-59	transcription termination factor MTERF2, chloroplastic isoform X1
trEMBL	A0A6I9Q933	2.9e-59	transcription termination factor MTERF2, chloroplastic isoform X2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G07900.1	34.81	6e-48	188		Mitochondrial transcription termination factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa0G03817	AT5G07900.1	293	189	2	60	350	107	399	34.81	6e-48	188
Asa0G03817	AT1G21150.1	313	210	3	43	352	81	388	30.35	2e-36	150
Asa0G03817	AT5G64950.1	361	235	6	14	362	35	383	28.25	8e-29	124

Ortholog group

Species	Genes
Allium cepa	g255368.t1; g255369.t1; g261762.t1; g358883.t1; g408198.t1; g441642.t1; g453006.t1; g553.t1; g564.t1; g566.t1
Allium fistulosum	AfisC1G06873; AfisC2G04306; AfisC2G04457; AfisC2G07851; AfisC2G07868; AfisC3G07893; AfisC3G08869; AfisC3G08870; AfisC6G03456; AfisC8G05715; AfisC8G05717; AfisC8G05719; AfisC8G05720
Allium sativum	Asa0G02745.1; Asa0G03817.1; Asa0G03818.1; Asa1G00188.1; Asa1G00199.1; Asa1G00205.1; Asa1G00211.1; Asa1G00214.1; Asa1G00216.1; Asa1G00217.1; Asa1G02536.1; Asa1G02539.1; Asa2G07344.1; Asa2G07345.1; Asa2G07346.1; Asa2G07356.1; Asa2G07358.1; Asa2G07360.1; Asa2G07362.1; Asa3G00317.1; Asa3G00319.1; Asa3G00320.1; Asa3G00321.1; Asa6G00019.1; Asa6G00089.1; Asa6G02068.1; Asa6G02079.1; Asa6G02083.1; Asa6G02691.1; Asa7G01244.1; Asa8G03524.1
Arabidopsis thaliana	AT1G21150.1; AT5G07900.1; AT5G64950.1
Oryza sativa	LOC_Os07g24090.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02536.11	mTERF	Family	53	331	105.3	2.7e-30

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15032	MTERFD; mTERF domain-containing protein, mitochondrial	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network