result

Gene information

Detail information of Asa0G04737

Location

Gene	Chr	Start	End	Strand
Asa0G04737	scaffold428	32267	34614	-

Sequences

CDS

Protein

Gene

>Asa0G04737.1
atgggAAGAGGCAAAACCgagataaagaaaatagaaaaccaGAACCAGAGGCAAGCTACTTTCTATAAAAGAAGAGATGGCTTGTTCAAAAAAGCTAAAGAATTATCCGTTCTTTGTGATACTAATCTCTTGTtggttttattttctaattctggAAAGCTTTATGAGTTCCACACTCCTACTGCGTCTTGGTATGGTTGTTTGCttttttatatccattttattctttctttttaatgtattTTCCTATCTTCTTTACTGTTTCATGCATTGAAAGCAGTAATGAGTTGATAGAAAGATTTGAGATGGTGACTGGAGCACAAGTTTGGAAGAATAGCAGGGTAAAATTTAGTTCCTTTTTTCTTGTATATGCTTAAATTTAGCATACATCACTAGTTCATAAGATTATTCTCAAATAGGATCAAGCTGCAGAAGCTGAAAGAATTGGAAAACTTTGTGAGCTTATGGAGAAAGAGCTTAGGTATGTCATTAGATATTAATTTGTCTACTCTAAAACGCCAAAGGAAGTAAGGAACTACATACAGATAGTTAAAACAAGCCATTATATGTTCTAAAACCTCAGTTCAAGTTACATTGTATGTATAATTGGAGAAACAGGTTCATGATGATAGATAAAAACCAAGAGTATACAATGCCGGTTTTGGACATCCTGGAACATAATTTAGAGTCTGCAATTAGCAAAGTAAGATTTGAGAAGGAGAGAAAGATTATGGGAGAAACAAGCCATCTGGAAAACAAGGTACAATGTTTTTTGTATGTAAGTAGTGACATTGATTAAGATTTACATGAGTTTTGGCCTTTTGTGACTGATGAAGTTTTTGAATAATGAAGGTGAATTATCGACTACAAGAAAGATACGGCTTATATGAAAAGGTAGGGATATTTTATATATGGAGTTTCACACTCTTATTATTACTGCACACATATCATTACATGAAGCGAATGTGGTTGGAACATTAGAGGATGGCCAACCAACCGTCCTTTTTTTAAAGGCCACTCCATGTGTTGTCCTTTAAATAGAACAGTATGTACTGCTTAGGTAACTAGGTTTTCATATATACGTATATCACTGCATTATTTCATCTTTCATTGATATTTTACAGGAGGGGAAAAAGTTCATCTGATCACTTTCATTTTATGTAGGTTTAATGAAATCAAATATCTATGACCCCATTTTGATAAGTaatacattcaattcaaatttagaatGGAAAAAAGAACGAACAGTCAATTAATATGTTAAGATGGCTGCAGGCCAGTTCTTTACATTGTCAAGTGGAAGTAAAATCAATTAAACATTGCTATTAATGCCTGCATTCCAAAAATAACAATAATCAGAGTTCAGGCTTAAAACGTAGGTCGTATAGTACTGCAAGCCACGctagtattttttttctttaaacgtTATTATTATGGAACcaaaagacaaatatataaaactgCCCTAAATGATGGAAACAGATGGAGTAATAAACCAAAGTTGGTACAAGTTTGCAATTTATAAACTTGAAGAATTTGAAAAAGGAATCTAGGGTTTTCTAACATCAGCCTGTCTATTGATATGACCATGTCCTTTGTGTCCTAACCATTATGGCAGTTGTGGGCTAAGCTGTACCAGCTCATTTTCCCTACTATTGCTTTCTTTCAAAAATACATCAAATCAGGAAATTTACTTCTCATAAAATATAACCCAAGGCCTTCATGGTAAACAACGTGGTGTATAAAGCAGGGCCATAAAATTAAGTTATACTTAATATTAGGCTTTCTCTCCCAATGGTTCAAGTTATGCGTAACATTCAGGATTTTGAACGGGGTCTGGCGTCCATTTTGTGGGCACCAGATGTCTGGCATCTATTTTATAGACATCAGACATTTAGCGTGCATAAAATGGACACCAGACCCAATTTTTTTTCATGGTGAGAACTGTTTTCTCCAAccaagattttttttaatgtttttaccGGTCATAAATGAGTTGGCGTCCATTTTATAGACGCCAGAAGTCTATCGCTCATTAAATAGGAGTCAGACCATTGGAGAATTAGATGGCGTTACGCTTTGAATATTCACAACGTAATTCACTAGAGATGCCCTAAGAACCATTATAaatctgtaatattttttttttttttttttttttaatttattcagaTATCTAACCACCAGGGCATGCAATACGCAAGAGGTGAATCAAGTGGTAATAGAAACGAGCTTGATCTCAAATTAGGTAAATAATACATCCTCTTCAACCAGCTTGAATTTACCAATTATTTGTGCATTTTAGTTTGGTTTGGAAGTGACTGTAATTAAATGCAGGATTCAACTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020265367.1	1.2e-59	MADS-box transcription factor 32-like isoform X1
Swissprot	Q8S151.1	2.4e-52	OsMADS32
trEMBL	K9LYZ8	1.3e-55	OsMADS32-like protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G20240.1	37.50	4e-23	104	PI	K-box region and MADS-box transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa0G04737	AT5G20240.1	136	84	1	1	135	1	136	37.50	4e-23	104
Asa0G04737	AT5G23260.3	152	77	4	1	145	1	147	41.45	1e-21	99.8
Asa0G04737	AT2G03710.3	157	97	1	1	152	1	157	35.03	2e-21	99.0

Ortholog group

Species	Genes
Allium cepa	g183622.t1; g183623.t1; g289794.t1
Allium fistulosum	AfisC5G01427
Allium sativum	Asa0G00095.1; Asa0G04737.1; Asa3G03177.1; Asa3G04561.1; Asa3G04562.1; Asa8G00122.1; Asa8G00123.1
Arabidopsis thaliana
Oryza sativa	LOC_Os01g52680.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00319.15	SRF-TF	Domain	10	57	79.1	1.1e-22
PF01486.14	K-box	Family	87	166	37.7	1.6e-09

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0046983	F	protein dimerization activity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09264	K09264; MADS-box transcription factor, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network