Detail information of Asa1G04574


Location
GeneChrStartEndStrand
Asa1G04574chr112261698361226176016+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020247477.13.5e-54ATP-dependent DNA helicase DDM1 isoform X2
SwissprotQ9XFH4.11.5e-49SWI/SNF2-related matrix-associated actin-dependent regulator of chromatin DDM1
trEMBLA0A1D1YNZ41.5e-54ATP-dependent DNA helicase DDM1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G66750.158.483e-51 198ATDDM1;CHA1;CHR01;CHR1;DDM1;SOM1;SOM4chromatin remodeling 1

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag303421.t1; g420178.t1
Allium fistulosumAfisC2G05935; AfisC5G05958
Allium sativumAsa0G02421.1; Asa1G04574.1; Asa4G05535.1
Arabidopsis thalianaAT5G66750.1
Oryza sativaLOC_Os03g51230.1; LOC_Os03g51230.2; LOC_Os09g27060.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00271.28Helicase_CFamily6917761.57.9e-17

Gene Ontology
AccessionOntologyName
GO:0003676Fnucleic acid binding
GO:0004386Fhelicase activity
GO:0005524FATP binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K19001HELLS, DDM1; ATP-dependent DNA helicaseEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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