Detail information of Asa2G00250


Location
GeneChrStartEndStrand
Asa2G00250chr2115056907115057615-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrPNX90425.14.6e-09replication factor-A carboxy-terminal domain protein, partial
trEMBLA0A2N9I5751.3e-10ATP-dependent DNA helicase

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT2G05642.128.687e-1060.5Nucleic acid-binding, OB-fold-like protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag106141.t1; g112901.t1; g115463.t1; g116373.t1; g116396.t1; g116398.t1; g134686.t1; g135123.t1; g139391.t1; g140240.t1; g161441.t1; g164289.t1; g177160.t1; g201656.t1; g203306.t1; g205935.t1; g233077.t1; g233169.t1; g238300.t1; g254215.t1; g265403.t1; g275278.t1; g280075.t1; g284280.t1; g294708.t1; g299193.t1; g304789.t1; g306986.t1; g308420.t1; g309411.t1; g309508.t1; g319886.t1; g332412.t1; g340261.t1; g342147.t1; g348061.t1; g35619.t1; g35620.t1; g358237.t1; g359054.t1; g365724.t1; g366735.t1; g373580.t1; g383914.t1; g413303.t1; g415116.t1; g415411.t1; g42975.t1; g437213.t1; g439713.t1; g442471.t1; g444106.t1; g445988.t1; g453602.t1; g454555.t1; g454787.t1; g454788.t1; g48054.t1; g489497.t1; g495310.t1; g503734.t1; g510653.t1; g514083.t1; g514084.t1; g534000.t1; g53664.t1; g73992.t1; g77413.t1; g82907.t1; g82910.t1; g83149.t1; g86770.t1; g92788.t1; g9857.t1
Allium fistulosumAfisC1G01040; AfisC1G01306; AfisC1G01396; AfisC1G03376; AfisC1G03575; AfisC1G03622; AfisC1G03835; AfisC1G04569; AfisC1G04748; AfisC1G05166; AfisC1G05601; AfisC1G05873; AfisC1G06106; AfisC1G07106; AfisC1G07354; AfisC1G08467; AfisC1G08899; AfisC1G08985; AfisC2G02445; AfisC2G02793; AfisC2G03877; AfisC2G04843; AfisC2G05412; AfisC2G05678; AfisC2G06296; AfisC2G06915; AfisC2G07411; AfisC3G00999; AfisC3G01639; AfisC3G01981; AfisC3G02791; AfisC3G03023; AfisC3G03514; AfisC3G03600; AfisC3G03707; AfisC3G04175; AfisC3G04383; AfisC3G04384; AfisC3G04737; AfisC3G05359; AfisC3G05549; AfisC3G05706; AfisC3G06870; AfisC3G07087; AfisC3G07212; AfisC3G07671; AfisC4G00790; AfisC4G03144; AfisC4G04786; AfisC4G05254; AfisC5G00917; AfisC5G01190; AfisC5G01592; AfisC5G02036; AfisC5G05192; AfisC5G05528; AfisC5G05927; AfisC5G05966; AfisC5G06445; AfisC5G06593; AfisC6G00059; AfisC6G00403; AfisC6G00514; AfisC6G01518; AfisC6G02461; AfisC6G04076; AfisC6G04247; AfisC6G06207; AfisC7G01821; AfisC7G02180; AfisC7G02555; AfisC7G02617; AfisC7G03271; AfisC7G05545; AfisC8G00616; AfisC8G01179; AfisC8G01196; AfisC8G01218; AfisC8G01579; AfisC8G01643; AfisC8G01871; AfisC8G02026; AfisC8G02309; AfisC8G02566; AfisC8G02578; AfisC8G02713; AfisC8G02725; AfisC8G04470; AfisC8G05662
Allium sativumAsa0G00028.1; Asa1G02992.1; Asa2G00250.1; Asa2G03564.1; Asa4G04199.1; Asa5G02336.1; Asa5G04339.1; Asa5G04340.1; Asa6G04329.1
Arabidopsis thaliana
Oryza sativaLOC_Os11g47400.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF08646.7Rep_fac-A_CFamily1615159.03.8e-16

Gene Ontology
AccessionOntologyName
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KEGG pathway
KONameEnzyme IDPathwayPathway ID
K07466RFA1, RPA1, rpa; replication factor A1EC:- DNA replicationko03030
Nucleotide excision repairko03420
Mismatch repairko03430
Homologous recombinationko03440
Fanconi anemia pathwayko03460

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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