Detail information of Asa2G02641


Location
GeneChrStartEndStrand
Asa2G02641chr2718508043718514535+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrONK74590.11.4e-195uncharacterized protein A4U43_C03F8060
SwissprotQ8W4F0.36.6e-179Protein DA1-related 1
trEMBLA0A5P1FDI19.8e-196LIM zinc-binding domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT4G36860.172.204e-178 621LIM domain-containing protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag206664.t1; g331720.t1; g342402.t1; g363944.t1
Allium fistulosumAfisC2G05310; AfisC3G01668; AfisC3G03286
Allium sativumAsa0G03349.1; Asa2G00720.1; Asa2G02641.1
Arabidopsis thalianaAT2G39830.1; AT4G36860.1
Oryza sativaLOC_Os03g16090.1; LOC_Os03g16090.2; LOC_Os03g42820.1; LOC_Os03g42820.2; LOC_Os03g42820.3; LOC_Os03g42820.4; LOC_Os06g08400.1; LOC_Os06g08400.2; LOC_Os12g40490.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02809.17UIMMotif395413.20.057
PF02809.17UIMMotif789112.10.14
PF00412.19LIMDomain11917536.63.5e-09
PF12315.5DUF3633Family268477320.82.6e-96

Gene Ontology
AccessionOntologyName
GO:0008270Fzinc ion binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K05760PXN; paxillinEC:- VEGF signaling pathwayko04370
Focal adhesionko04510
Regulation of actin cytoskeletonko04810
Leukocyte transendothelial migrationko04670
Chemokine signaling pathwayko04062

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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