Detail information of Asa2G05711


Location
GeneChrStartEndStrand
Asa2G05711chr215781541281578156428-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020264063.12.2e-78uncharacterized protein LOC109839993
SwissprotQ9FHH8.29.3e-05Zinc finger protein CONSTANS-LIKE 5
trEMBLA0A5P1EXA41.6e-78CCT domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT5G53420.142.961e-47 186CCT motif family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag166076.t1; g287657.t1; g288328.t1; g296114.t1; g349412.t1; g445049.t1
Allium fistulosumAfisC1G09126; AfisC2G01393; AfisC2G02631; AfisC3G07128; AfisC4G01511; AfisC4G01526; AfisC5G02264; AfisC5G06182; AfisC6G01596; AfisC7G01376; AfisC7G04700; AfisC8G05502; AfisS1410G00003
Allium sativumAsa0G01329.1; Asa0G01380.1; Asa0G01501.1; Asa2G05711.1; Asa3G03711.1; Asa3G03712.1; Asa4G05865.1; Asa6G06995.1
Arabidopsis thalianaAT4G27900.1; AT4G27900.2; AT5G53420.1; AT5G53420.2; AT5G53420.3
Oryza sativaLOC_Os05g51690.1; LOC_Os05g51690.2; LOC_Os05g51690.3

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF06203.11CCTMotif22026264.37.2e-18

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K03539RPP1, RPP30; ribonuclease P/MRP protein subunit RPP1EC:3.1.26.5 RNA transportko03013
Ribosome biogenesis in eukaryotesko03008

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.