result

Gene information

Detail information of Asa3G00077

Location

Gene	Chr	Start	End	Strand
Asa3G00077	chr3	31213098	31216062	+

Sequences

CDS

Protein

Gene

>Asa3G00077.1
TCTGGTTTATATGGCAAAAGAAATAAAGACTGGTGAAGTCGTGGCATTGAAGAAAATTAGAATGGACAATGAGAGAGAAGGGGTATGCATTTTAATGATTCATGTGCAGCCATTTCGTCTATAAAACGGTCTCCATCTCTTCTTTAGTTATACTTATGATCTTTAATTTCTTCAGTTTCCTATAACTACCATACGTGAAATAAAAATCCTCAAGAAACTGCACCATGACAATGTAATCCAGCTGAAAGAAATTGTAACTTCTCCAGGCCCTGAAAGAGATGAACAAGGGAGGCCAGGCATATTGTTCTTTTTAGTTTCTCTGGCTGTTTAATGACCGTTATAAGAATAAATTGTTTAATCAGCATATTTACTTTACTCAAACTGACGTTTTCTATATGTAGTTGATAAAAGTTATTGTAAAATCTAAATGATCCACCTTCGTTGTGAAGTAGATAATATTCGTTAAGATTTTTTTtatcttctatttttgtttttattgtatGGTAATAAAGTAGATGGAAACAAATACAAGGGGAGCATTTatatggtatttgaatatatgggTCATGATTTAACGGGACTTTCAGATAGACCTAGTATGCGGTTCACCGTACCTCAAATAAAGGTACTTATCACAGATTAGAAAAagtgatttgttgattgatgtttgagtcCTTATTTGTTTATTGAACCTTTTGCCAGTGCTACATGAAGCAATTGCTAACTGGATTGCACTATTGCCATGTAAATCAAGTTCTTCATTGCGACATAAAAGGTTAGCTCTGACCAAATAGTCATCTTGAAAATTGTAGGTACATTGTTCTAACCTTGCTTCACTGCATATATTCTTCAGGATCTAATTTGCTAATTGATAACGAGGGTAAACTGAAGCTTGCAGATTTTGGTCTTGCTCGTTCGTTTTCAAGTGATCACATTGGGAACTTAACAAATCGTGTAATCACTCTGTGGTATAGGTAATGATTGTCGATGTATCACTTTACCATGTCACACCGATATTTATCTGTTTTTAAATCAATCAAACGATTGTTGCAGGCCCCCTAAGCTTCTACTTGGAACAACAAAATATGGCCCGACTGTAGATATGTGGTCAGTGGGTTGCATATTTGCAGAGCTATTACATGGTAAACCTATTTTGCCGGGGAAAAATGAGGTAATATGTTACTATAgatcctccattctttattttggTTTTCCAGAAGTACTTCTTACAATTATCTTTGATTAATTTTATAACACCCGTATATATCACTTTTATCATACCAAACTTTAAGAAGCTTTTATATATTTGCACAACGGCAGAGCCATTTGATTGGAAAACTAGAGCTCCTTTCATTCTGGAACCACTTCCCCACTACAttaataattattccaatttcaattACCATGTAGGTTGTCTAATATATAAGGTGTGTATGCATGGTAGTTGTATGTGCTACTCGCTATTCTCAAGATCGTCAACGACCAATAGTAATAAAAGACAACGTTGACGCACAGTAATCACAACATCAACAGTATGAATATAGTAGCAGTGGAAAGAAGATCACATAGTCGAGTTTATACTAGTTCAAATCTCCAATTCTACATCcggtctcaatatatatatatactgccttTTTACTGACACACACTCGCACGAGGAACCAGAGCAGAAGTACAAGATTTCAATATATTTGTCTGAACATCCGACAGAGACTTAAGTACCTTTGTTGTAGCAACAAAACAAGACTTCAACTTTGTGAACAAAAGTTACTGCTGTAGCAACAAAACAAGACTTCAACTTTGTGAACAAAAGTTACTTTTATcttaatttacaaatttatctCCTTTAGTGCACAACCTCCTATAACCACCACAGACAATATTGAGACTAATGAACGAGGTGTATAGAAAATAATATGCCTTTGCTGGGCAAAGTGGAGTAACAATGTGACGCTCAAAGTGTCTTAATTTGCTGTTTTGAGTGTTTTACAAATGaatgtataataaataaaaattggagtttttgatttgagaaaaaaattaatttcaatcgAGAGAGTAAGATTTTGAGTGAAAATAATCAAGTGATTGTTTTGGGGATGATATGAAGCTTATATAAGAGAGTGAAAGGAACAATTAAATAAGTGCAATCCTTCAGAAATTTGTTAGGCGAAGAGTAAGAGTAACACTGAATGGACATGAAGTACCGTTtgaaaaatataaccattggaGGAATTTTAAACACAAGATTTAAGGCAGCACAACACAACATTTTGCTTTAGAAAACACTATAAACTCCACTTGGAATGTAACCGTCGGAGCCTTGCCATTTTCGGCTAAAATGTTATGCTTTACTACTATGAAAAAATTGCTTCTATTTTGTCCTTTACTAACATTTCTTACCATTTTTCTTCcatttaaaagaaaaatctaataaaatgttaaatatattgatattagtTGTTTTTTAGAAATTTAAAGTGGCTTGGAGTTTGTTTGTGGGGTCTTAACCGTCTTAGACTGTAATAACTTGATTTAGACTAAGCTTATATTATACATTCTTTTGAAGCTCTTTAGTCCGAACACTTCTCAATTGCTAAGTATCCTTCGTATCATGTACGAACACTTCTCAATTGCtcaagttaattttaaaatttggttgGGAATTAATTATGGCTTGGCTTCACTGAAACTGAGCGTTACGCTCGGCTtcactgagccgtaatgctcagttaAGCTGAGTTGTAAGGCTCAAGTGATACTGAGCTTTACGGCACAGTTGAAACTGAgtgtaaggctcagcgaaactgagcttgCGGCtgagtttcagctgagccttacgctCCGCGAGGCTCAGTTTCATCTCAGCcttacgctcagcgaaactgagcttacggctcagtttcagctgagccttatgctcagcgaaactgagcattacggctcagtttcgctgaacacttga

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008802214.1	2.8e-105	cyclin-dependent kinase C-2 isoform X1
Swissprot	Q9LFT8.1	1.3e-104	Cyclin-dependent kinase C-1
trEMBL	A0A8B7CMI6	2.0e-105	cyclin-dependent kinase C-2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G10270.1	86.47	7e-107	383	CDKC;1	cyclin-dependent kinase C;1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa3G00077	AT5G10270.1	207	28	2	208	40	246	86.47	7e-107	383
Asa3G00077	AT5G64960.1	207	30	2	208	40	246	85.51	2e-105	378
Asa3G00077	AT5G64960.2	181	29	28	208	13	193	83.98	9e-90	326

Ortholog group

Species	Genes
Allium cepa	g272544.t1
Allium fistulosum	AfisC2G01767
Allium sativum	Asa1G02051.1; Asa3G00077.1; Asa4G04892.1
Arabidopsis thaliana	AT5G10270.1; AT5G64960.1; AT5G64960.2
Oryza sativa	LOC_Os01g72790.1; LOC_Os05g32360.1; LOC_Os08g35220.1; LOC_Os08g35220.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	2	210	188.3	1.5e-55

Gene Ontology

Accession	Ontology	Name
GO:0004672	F	protein kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0005524	F	ATP binding
GO:0006468	P	protein phosphorylation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08819	CDK12_13; cyclin-dependent kinase 12/13	EC:2.7.11.22 2.7.11.23	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network