result

Gene information

Detail information of Asa3G00682

Location

Gene	Chr	Start	End	Strand
Asa3G00682	chr3	193356694	193358330	-

Sequences

CDS

Protein

Gene

>Asa3G00682.1
ATGGGGGATCCAGTCACCCTCCAATTTTTTCCAGTCAATGAGCAGACGGAACAGAGGACTATAGGCGGTGATGTTACCACCGTTGATAAGTCTGCGGCCGTGGCAGTGGCGGCTAAGAAGAGCAGAAGAGGACCACGGTCAAGGAGTTCTCAATACAGAGGTGTTACTTTCTATCGAAGAACAGGGAGATGGGAATCTCATATTTGGGACTGTGGAAAGCAAGTATATTTAGGAGGTTTTGATACAACTCATGCTGCTGCAAGAGCTTATGACAGAGCTGCAATAAAATTTCGGGGTAAGGAGGCCGATATAAACTTCAGTTTAAGTGACTACGGAGATGATATGAATTAGAATAAAGATCTAACAAAAGAAGAGTTTGTTCATGTGCTTAGACGACAAAGCACAGGTTATCCAAGAGGAAGTTCAAAGTATAGAGGGGTCACTTTGCATAAATGTGGGAGATGGGAAGCTAGAATGGGTCAATTTCTGGGTAAAAAGTATGTGTATTTGGGACTATTTGATACCGAGGAAGAAGCTGCAAGAGCTTATGATAAAGAAGCAATTAAATGCAATGGGAAGGAAGCTGTGACAAACTTTGATCATGCAACTTACGAGAATGAACTGAATGTAGACGGTTGTCAGACTGATCAGAATCTCGATCTGAATTTGGGTAGTTTAAACTTGAAAAGAAGCAGGTTTGATTCAGTAGATGAAGAAAGGTCTATTGGGATCGATCAAAGATTACCAACAAGTTATGGATTTGATAGGGACCGCACCACAAAGCAAAAGATAACGAAGGATAAGCAAGAAGTGGAGATGGGCCTTTCTCTATCAATAGATGGCGAGCAAAGTGCGAATTCATCTAAATTGTTAGTCACAAGGGCTGCAGCATCATCAGGATTCTCGCCTCAGTTAGTAAAACCAACTCCTATTTGGTTGCAGAGTGGAATGAGCTTCAGTCTCTCCTTAGACTGATTTTCTACTTCACTTCTCTAACTTCTCGGCATTTTTTTTCTCTCCCCCTTTTTGTGTTTCAACACGTGAGCAACTATTGGCTACTGTTTTCCTGAAATgggttgaaatttttatatatttttttgggtGGTTTTAGATATAGATGGCATCTGACTCTTTGTGCTGCAGTCTATTTGAAATGTACGAGAATCTCTCTAATCAGTGTTCTGTTTGCATTAAAAAACAAAAAAGTAATGAAATATTCTCATTTGTACGAAAAAGCGATTGAAATTGATGATGTATTCATAGTTTATTTATTCTTCATTTTATTCGCACTTTAGGAAGAGTGTTTGCAAATATTGAAACATTGTTCATTGGCCATAATTATAGGAAAAGAGGGAGAGCATTTGAATACATTGTATCGGAGGGAATGTGCATTAGAACTTGAAAAGGCTATGAAAAAATCCGTTATACCAAAAATTGGGGGGCCAAATGAAGATGCAGCAATAGATAGTGACGAGATAGTAAATGAATGTAGTTTCTACGATGATGGATCAAAGAATGGCACGGAGAAGAAAAATGGTTCTAGTAAAGAAGGTTCCGACGATGCTAATTCTGATGATGGATCTAGCTCGAATAATTCAAGGGCTGAAGAGGTGCCACGGAAAATTTATCAAATATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020265583.1	3.9e-89	floral homeotic protein APETALA 2
Swissprot	P47927.1	3.1e-59	Floral homeotic protein APETALA 2
trEMBL	A0A5P1EYR3	1.4e-83	Polyadenylate-binding protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G36920.1	49.39	2e-58	223	AP2;AtAP2;FL1;FLO2	Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa3G00682	AT4G36920.2	326	91	8	22	278	101	421	49.39	2e-58	223
Asa3G00682	AT4G36920.1	326	91	8	22	278	101	421	49.39	2e-58	223
Asa3G00682	AT5G67180.1	339	92	9	4	284	40	351	47.79	1e-55	213

Ortholog group

Species	Genes
Allium cepa	g256880.t1; g329877.t1
Allium fistulosum	AfisC4G04821
Allium sativum	Asa1G03964.1; Asa2G01500.1; Asa2G02444.1; Asa2G02445.1; Asa3G00682.1; Asa3G00683.1; Asa5G04165.1; Asa5G04167.1; Asa8G03944.1; Asa8G04167.1
Arabidopsis thaliana	AT3G54990.1; AT3G54990.2; AT4G36920.1; AT4G36920.2; AT5G67180.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	50	99	36.9	2.9e-09
PF00847.17	AP2	Domain	105	152	36.8	3.1e-09

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09284	AP2; AP2-like factor, euAP2 lineage	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network