result

Gene information

Detail information of Asa3G00686

Location

Gene	Chr	Start	End	Strand
Asa3G00686	chr3	193546311	193548011	+

Sequences

CDS

>Asa3G00686.1
ATGACCTCGAAAACCCTATTATTCTCCATCTCATTCCTCCGCCACCTCTCCACGAAGCATATCATCGTTCCGGCCCCGCCAACTCTGGAAAACATATCCCGCGGCCATCACCGCAGGCAAGCCCTAACCGCCGCCAGGCTTGCTCTGATCGACTACCTCCACTTCACCCGCAGCCTCCCCTTCTCCCTCTCCGATCAAATCATCTCTAACTCCCCTTCCTGCCTCTCTTCCTTCCTCTCCCTCATCCCCTTTCCCTCCGACGCCACCCCATCCGACTTTCCCTCCTTCATCCGCCGCTTCCTCTCTTACCATCCAATCGACGAGGTCGAATTCTTCTCCGAATCCATCGGCCTTCGACCACCGTCGTCGATCTTAAGCAGCAAAAGTCCGTTCCTTTCCGACAACCTTGGACTGGTCCAAACCGCGTTGATGCTGGTCAGATTTGGCTTTCCTTTTCAGAAACTGGGTTTGCTCCATCAGGTACTTAAGCAAGATGAAAACGAGTTGATTGAGAGGTTGAATTTGTTAGAGGCGTTAGGGTTTAGGCGTGTTTTGGTGATTGGGGCATGTCTTGCGTTTCCCTGGGTTTTGAAGAGTGACGTGGGGGAGAAGGAAAAGTTGTTGTTTCAAGATTTGAGTTCGATCTTGTTGGATTATGAGTTGAATGATGTGGATTTTGTGTTTGAAATGTGTAGGAAAGTAGGTTTATTTTATGATAGAGGGGTGGAGATAGGGAATATGGGGGAGATAATGGGAAAGAATAGACAGATTCTTCTGCAGGTCAAGGAGAGAGATTTGAGATGGAATTTAGATTTTTTCATGAAGTTGGGCATGAGCAAGAAGGACATGGGGATATTTGCTTTACGTTTTGTTGGTGTCTTCAATATCGAGTTAAAGAGCATGGAGATTGTCATGCCAGATGTTTTGGTGAAGCTTTTAGGTTTAGATGAAGATGAAGTTGAAAAAATTGGGAAGATGTATCCTTATGTGATGGGGAAGAATGTTGCAGGTAATTTATTAGGGATTTTGAAAGCTTTGGATTTAGATAAGCAGTTAAATGATAAAGTTACAAACATGGGTTTTCGCTGTTTGAAGGTTTTCCGCAATGTAGTTAACTTTAACTTGTGTGTTGATGATAATGATAGGCTGGAGGAAGAATTTTTAGAAAATATGAAGGTTTTTAAGTCTAGACAAAAAGTTGAATATTTGGATAATAAGCTTGATTTTTTGTATAGTATTGGGTTTGGGAAGAATAAAATTACATCAAAGATTGTATCGGTATTAAAAGGCCCGGTGGATCAATTGCAGGAGAGATTTGATTGCCTTATCGGATTTGGGATCGAGTACAGCGATGTTTGTAAAATGATAAGTGGTACCCCTACACTTTTAAATCAAAGCACAGAGAATATTTGTAAGAAAGTGAACTATCTTTGCGATGAGCTGGGTTATCCATTATATTTTTTAATTGATTGCCCATTCTATTTGTGTTTTGATTTGGAAAAGAGGATAAAGCCAAGATATGACATTATGAATTGGCTTAAAGAAATTGGATTTGTGAAGAAAACAATTTCTCCTGCAACTATACTTTCTAATGATGAAAAGAGGTTCATCATTTACCTCTACAAAATTCATCCGGCTGCTCCTAAACAATGGTTAGAGACTTTTTCATCGAGGAACCGTGTCATCTCAAGTAAAACGTGA

Protein

Gene

>Asa3G00686.1
ATGACCTCGAAAACCCTATTATTCTCCATCTCATTCCTCCGCCACCTCTCCACGAAGCATATCATCGTTCCGGCCCCGCCAACTCTGGAAAACATATCCCGCGGCCATCACCGCAGGCAAGCCCTAACCGCCGCCAGGCTTGCTCTGATCGACTACCTCCACTTCACCCGCAGCCTCCCCTTCTCCCTCTCCGATCAAATCATCTCTAACTCCCCTTCCTGCCTCTCTTCCTTCCTCTCCCTCATCCCCTTTCCCTCCGACGCCACCCCATCCGACTTTCCCTCCTTCATCCGCCGCTTCCTCTCTTACCATCCAATCGACGAGGTCGAATTCTTCTCCGAATCCatcggccttcgaccaccgtcgtCGATCTTAAGCAGCAAAAGTCCGTTCCTTTCCGACAACCTTGGACTGGTCCAAACCGCGTTGATGCTGGTCAGATTTGGCTTTCCTTTTCAGAAACTGGGTTTGCTCCATCAGGTACTTAAGCAAGATGAAAACGAGTTGATTGAGAGGTTGAATTTGTTAGAGGCGTTAGGGTTTAGGCGTGTTTTGGTGATTGGGGCATGTCTTGCGTTTCCCTGGGTTTTGAAGAGTGACGTGGGGGAGAAGGAAAAGTTGTTGTTTCAAGATTTGAGTTCGATCTTGTTGGATTATGAGTTGAATGATGTGGATTTTGTGTTTGAAATGTGTAGGAAAGTAGGTTTATTTTATGATAGAGGGGTGGAGATAGGGAATATGGGGGAGATAATGGGAAAGAATAGACAGATTCTTCTGCAGGTCAAGGAGAGAGATTTGAGATGGAATTTAGATTTTTTCATGAAGTTGGGCATGAGCAAGAAGGACATGGGGATATTTGCTTTACGTTTTGTTGGTGTCTTCAATATCGAGTTAAAGAGCATGGAGATTGTCATGCCAGATGTTTTGGTGAAGCTTTTAGGTTTagatgaagatgaagttgaaaaaATTGGGAAGATGTATCCTTATGTGATGGGGAAGAATGTTGCAGGTAATTTATTAGGGATTTTGAAAGCTTTGGATTTAGATAAGCAGTTAAATGATAAAGTTACAAACATGGGTTTTCGCTGTTTGAAGGTTTTCCGCAATGTAGTTAACTTTAACTTGTGTGTTGATGATAATGATAGGCTGGAGGAagaatttttagaaaatatgaagGTTTTTAAGTCTAGACAAAAAGTTGAATATTTGGATAATAAGCTTGATTTTTTGTATAGTATTGGGTTTGGGAAGAATAAAATTACATCAAAGATTGTATCGGTATTAAAAGGCCCGGTGGATCAATTGCAGGAGAGATTTGATTGCCTTATCGGATTTGGGATCGAGTACAGCGATGTTTGTAAAATGATAAGTGGTACCCCTACACTTTTAAATCAAAGCACAGAGAATATTTGTAAGAAAGTGAACTATCTTTGCGATGAGCTGGGTTATCcattatattttttaattgattgcccattctatttgtgttttgatttggaaAAGAGGATAAAGCCAAGATATGACATTATGAATTGGCttaaagaaattggatttgtgaagaaaacaatttctCCTGCAACTATACTTTCTAATGATGAAAAGAGGTTCATCATTTACCTCTACAAAATTCATCCGGCTGCTCCTAAACAATGGTTAGAGACTTTTTCATCGAGGAACCGTGTCATCTCAAGTAAAACGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008779561.1	3.9e-125	transcription termination factor MTEF18, mitochondrial
Swissprot	Q9M219.1	2.4e-87	Protein SUPPRESSOR OF HOT1-4 1
trEMBL	A0A835RZI7	4.6e-128	Transcription termination factor MTEF18, mitochondrial

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G60400.1	35.79	2e-90	330	SHOT1	Mitochondrial transcription termination factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa3G00686	AT3G60400.1	556	322	9	16	558	18	551	35.79	2e-90	330
Asa3G00686	AT5G06810.1	575	361	16	14	550	596	1131	23.83	6e-30	129
Asa3G00686	AT5G06810.1	528	325	14	45	538	78	562	23.86	6e-28	122

Ortholog group

Species	Genes
Allium cepa	g142232.t1; g204271.t1; g276583.t1; g372734.t1; g410041.t1
Allium fistulosum	AfisC1G02170; AfisC7G02557; AfisC7G02586; AfisC7G05605; AfisC7G05608; AfisC7G05618
Allium sativum	Asa3G00679.1; Asa3G00681.1; Asa3G00686.1; Asa6G06009.1; Asa7G02162.1
Arabidopsis thaliana	AT3G60400.1
Oryza sativa	LOC_Os07g22670.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02536.11	mTERF	Family	432	536	52.7	2.8e-14

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15032	MTERFD; mTERF domain-containing protein, mitochondrial	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network