result

Gene information

Detail information of Asa3G03350

Location

Gene	Chr	Start	End	Strand
Asa3G03350	chr3	915245693	915246692	-

Sequences

CDS

Protein

Gene

>Asa3G03350.1
ATGTCTTCTGATACCGGCATCAAATTGTTCGGAAAGACCATTGCCATTCCATTTTGCAGTGAGGAAGATGGTGAAGACCATGATAAGGTAAGATTTACTTCTACTACACATTCTTAGCTTAATATCAACTATGTTTTAGAAACTTCCATATCATGCTTATATTGAACTTTGCTGAATTCTGAAAACAATTAGAAGAATATTTGGAGGCTACCTTCACCATTAATAGATGTATGTAAATTTTCAGTGTTCACCAAGAGACAAGGAACAACTATCAGAGGAGCCACGGAGTGCCGAGGAAAATCAGGACGACCACAACGATAGACAAGAGAAAACAGCATTGAAAAAGCCGGATAAAATACTTGCCTGCCCGAGATGCAGAAGCATGGACACGAAATTCTGCTACTATAACAATTACAACATTAACCAACCTCGCCACTTCTGCAAGAATTGCCAAAGATACTGGACAGCCGGCGGCACCATGAGAAACGTTCCAGTCGGCGCTGGTCGCCGCAGAAGCAAAAACTCCGCAAATTCGCAGTTCCAACAACTGATCATTTCTGATACAACATTAAAGGCCAATGATGGTAGTAGCAATAATAGTGGTAGCAGGGTTCTTAGCTTTGGATGTGATGCACTGCCTGCGGCGGCAAATGAACATAAAACTGCGACTGCGACTTCAAATCCAATAGACGACAGCAGCGGTGCGAACTTCCAATGGACACCATGGCCTTATCCATGGGCACCCCCACCTACTCCGATAATATGGGGTTATGGTACACCTTGGATATCCCCTATAGTTATgacaacttcttcttcttctgcacCTGCATCAGGGCATCTATCTCCTCTTGGAAAACATTCAAGAGAGAGAAACGGTGTTAGCAAAGAATATGAAGGTGATTCGGGTAGGAAAGGAAATATATGGATACCTAAAACACTGAGGATTGATGATCCTGAAGAGGCAGCAAAGAGCTCAATCTGGGCAACCTATGGGGTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	ATG31847.1	2.0e-122	cycling dof factor 8, partial
Swissprot	Q8W1E3.2	2.7e-44	Dof zinc finger protein DOF5.5
trEMBL	A0A291FGD4	1.4e-122	Cycling dof factor 8 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G62430.1	41.75	1e-48	190	CDF1	cycling DOF factor 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
Asa3G03350	AT5G62430.1	285	124	8	2	280	4	252	41.75	1e-48	190
Asa3G03350	AT5G39660.2	276	112	8	61	280	131	406	39.13	6e-44	174
Asa3G03350	AT5G39660.1	276	112	8	61	280	131	406	39.13	6e-44	174

Ortholog group

Species	Genes
Allium cepa	g189953.t1; g40934.t1; g463157.t1
Allium fistulosum	AfisC2G05921; AfisC6G04768; AfisC7G01978
Allium sativum	Asa0G00536.1; Asa0G04982.1; Asa3G01472.1; Asa3G03350.1
Arabidopsis thaliana	AT3G47500.1; AT5G62430.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02701.12	zf-Dof	Family	66	122	109.0	8.2e-32

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0006355	P	regulation of transcription, DNA-templated

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16222	CDF1; Dof zinc finger protein DOF5.5	EC:-	Circadian rhythm - plant	ko04712

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network